New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3424447 =	20 (1.060)	4 (0.220)	4/234	NT	18.6%	coding (355/363 nt)	PP_3039	hypothetical protein
	?	NC_002947	3424498 =	16 (0.900)					intergenic (+43/‑469)	PP_3039/PP_3040	hypothetical protein/holin

AGCTCTACCTGGTGGTTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGT  >  NC_002947/3424301‑3424589                                                                                                                                                   |                                                                                                                                               tgtaaagagagagattaaaagcacgctgcgcgcaacgcgcgcgtgatgcgctgcacacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCgg                                                                                                                                             >  1:146393‑M1/147‑150 (MQ=255)         cTGGTGGTTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTc                                                                                                                                     <  2:286590/150‑1 (MQ=255)              attaaaagcacgctgcgcgcaacgcgcgcgtgatgcgctgcacacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCATGATTCGCCAt                                                                                                                                <  2:307181‑M1/17‑1 (MQ=255)                ttCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTATTGGCGCGAGCAGCATGATACGCCATcc                                                                                                                              >  2:283797/1‑150 (MQ=255)                           tactGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTAcc                                                                                                                   >  2:296357/1‑150 (MQ=255)                              tGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTc                                                                                                                >  1:385051/1‑150 (MQ=255)                                tAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTccc                                                                                                              >  2:472154/1‑150 (MQ=255)                                                gcgctgcacacgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCcgc                                                                                              >  1:307181‑M1/100‑150 (MQ=255)                                                    aCCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGttt                                                                                          <  1:283797/150‑1 (MQ=255)                                                         acgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGcc                                                                                                <  1:30194‑M1/49‑1 (MQ=255)                                                         acgcctatgtgcgcgccttcgtgtgtacggtgggacggtgggacagcccgcgacctgcgcgggcttgagctaggctgacctgcatcaaacGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGcc                                                                                                >  2:30194‑M1/91‑139 (MQ=255)                                                              ccGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTc                                                                                <  2:385051/150‑1 (MQ=255)                                                                   aCTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCt                                                                           >  2:116718/1‑150 (MQ=255)                                                                          gtgtAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCaa                                                                    <  1:472154/150‑1 (MQ=255)                                                                                     aTACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAgg                                                         <  1:419719/150‑1 (MQ=255)                                                                                              aCAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGAt                                                                                       <  1:75759/111‑1 (MQ=255)                                                                                              aCAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGAt                                                                                       >  2:75759/1‑111 (MQ=255)                                                                                                aaGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTgt                                              >  1:335851/1‑150 (MQ=255)                                                                                                            gAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTTCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTc                                                                      >  2:146611/1‑114 (MQ=255)                                                                                                            gAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTc                                                                      <  1:146611/114‑1 (MQ=255)                                                                                                                          tATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAg                    <  1:230032/150‑1 (MQ=255)                                                                                                                              gCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGttt                                                                                          <  2:281286/76‑1 (MQ=255)                                                                                                                              gCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGttt                                                                                          >  1:281286/1‑76 (MQ=255)                                                                                                                                        tctTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGc      <  1:334706/150‑1 (MQ=255)                                                                                                                                            ggggCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCTCGGGCAGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCgtgt  >  1:495365/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                               AGCTCTACCTGGTGGTTCGTGAGCACTACTGTAACGCCGACAGCGAGCTGTACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGT  >  NC_002947/3424301‑3424589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.