New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3424447 =	20 (1.060)	4 (0.220)	4/234	NT	18.6%	coding (355/363 nt)	PP_3039	hypothetical protein
	?	NC_002947	3424498 =	16 (0.900)					intergenic (+43/‑469)	PP_3039/PP_3040	hypothetical protein/holin

ACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCACGCGCGCGTTGCGCGCAGCGTGCTTTTAATCTCTCTCTTTACA  >  NC_002947/3424352‑3424643                                                                                                                                                   |                                                                                                                                                  aCCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGttt                                                                                                                                                <  1:283797/150‑1 (MQ=255)           ccGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTc                                                                                                                                      <  2:385051/150‑1 (MQ=255)                aCTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCt                                                                                                                                 >  2:116718/1‑150 (MQ=255)                       gtgtAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCaa                                                                                                                          <  1:472154/150‑1 (MQ=255)                                  aTACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAgg                                                                                                               <  1:419719/150‑1 (MQ=255)                                           aCAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGAt                                                                                                                                             >  2:75759/1‑111 (MQ=255)                                           aCAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGAt                                                                                                                                             <  1:75759/111‑1 (MQ=255)                                             aaGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTgt                                                                                                    >  1:335851/1‑150 (MQ=255)                                                         gAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTTCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTc                                                                                                                            >  2:146611/1‑114 (MQ=255)                                                         gAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTc                                                                                                                            <  1:146611/114‑1 (MQ=255)                                                                       tATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAg                                                                          <  1:230032/150‑1 (MQ=255)                                                                           gCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGttt                                                                                                                                                >  1:281286/1‑76 (MQ=255)                                                                           gCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGttt                                                                                                                                                <  2:281286/76‑1 (MQ=255)                                                                                     tctTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGc                                                            <  1:334706/150‑1 (MQ=255)                                                                                         ggggCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCTCGGGCAGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCgtgt                                                        >  1:495365/1‑150 (MQ=255)                                                                                                gcggcaggacggcagcgggacggtaggaccgtggatggcgaatcatgccgcGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAgcgc                                                 >  1:307181‑M2/52‑150 (MQ=255)                                                                                                  ggcaggacggcagcgggacggtaggaccgtggatggcgaatcatgccgcGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCgt                                                          <  1:30194‑M2/90‑1 (MQ=255)                                                                                                  ggcaggacggcagcgggacggtaggaccgtggatggcgaatcatgccgcGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCgt                                                          >  2:30194‑M2/50‑139 (MQ=255)                                                                                                    CATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCt                                                                                                                             >  1:384805‑M1/1‑70 (MQ=255)                                                                                                    CATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCt                                                                                                                             <  2:384805‑M1/70‑1 (MQ=255)                                                                                                    CATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCa                                             <  1:497437‑M1/150‑1 (MQ=255)                                                                                                    CATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCa                                             <  1:76900‑M1/150‑1 (MQ=255)                                                                                                          tCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCAcgcgcg                                       >  1:137266/1‑150 (MQ=255)                                                                                                                  cACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCACGCGCGCGTTgcgc                               >  1:98976/1‑150 (MQ=255)                                                                                                                       tCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCACGCGCGCGTTGCGCGCAGc                          <  2:76900/150‑1 (MQ=255)                                                                                                                                cccGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCACGCGCGCGTTGCGCGCAGCGTGCTTTTa                 <  1:116718/150‑1 (MQ=255)                                                                                                                                  atggcgaatcatgccgcGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCACGCGCGCGTTGCGCGCAGCGTGCTTTTAAt               <  2:307181‑M2/133‑1 (MQ=255)                                                                                                                                          tCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCACGCGCGCGTTGCGCGCAGCGTGCTTTTAATctctctct       <  2:335851/150‑1 (MQ=255)                                                                                                                                          tCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCACGCGCGCGTTGCGCGCAGCGTGCTTTTAATctctctct       <  1:296357/150‑1 (MQ=255)                                                                                                                                               ccgcGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCACGCGCGCGTTGCGCGCAGCGTGCTTTTAATCTCTCTCTTTaca  >  1:146393‑M2/5‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                  ACCAAAAGTACCGGCACTGTGGGTGTAGCCGGGATACCTATTACAAGCGCTTACATGAGGCGCACGTCTGTATCGCAGGCTTGCTCTTGGGGCGAGCGGCATGATTCGCCATCCACGGTCCTACCGTCCCGCTGCCGTCCTGCCGCGTTTGATGCAGGTCAGCCTAGCTCAAGCCCGCGCAGGTCGCGGGCTGTCCCACCGTCCCACCGTACACACGAAGGCGCGCACATAGGCGTGTGCAGCGCATCACGCGCGCGTTGCGCGCAGCGTGCTTTTAATCTCTCTCTTTACA  >  NC_002947/3424352‑3424643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.