New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4117899	23 (1.220)	4 (0.230)	4/232	NT	15.2%	coding (545/2256 nt)	PP_3622	isoquinoline 1‑oxidoreductase subunit beta
	?	NC_002947	= 4117925	23 (1.300)					coding (571/2256 nt)	PP_3622	isoquinoline 1‑oxidoreductase subunit beta

AGCATGTCGGTGCGCATGAGCTACCCCACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGG  >  NC_002947/4117751‑4118046                                                                                                                                                     |                                                                                                                                                    agcaTGTCGGTGCGCATGAGCTACCCCACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGa                                                                                                                                                    >  2:501572/1‑150 (MQ=255)         ggTGGGCATGAGCTACTCCACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGt                                                                                                                                            >  2:63091/1‑150 (MQ=255)               cATGAGCTACCCCACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTa                                                                                                                                      <  2:182106/150‑1 (MQ=255)                          ccaccaTGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTgg                                                                                                                           >  2:448550/1‑150 (MQ=255)                             ccaTGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGccg                                                                                                                        <  2:165449‑M2/150‑4 (MQ=255)                             ccaTGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGccg                                                                                                                        >  1:63091‑M2/1‑147 (MQ=255)                                     cGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaacgtccggtcgtgg                                                                                                                 <  2:54615‑M1/149‑37 (MQ=255)                                     cGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaacgtccggtcgtgg                                                                                                                 >  1:54615‑M1/1‑113 (MQ=255)                                                                 tgctgcAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCa                                                                                    >  2:91265/1‑150 (MQ=255)                                                                             gcgcCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaacgtccggtcgtggtat                                                                                                              >  1:348565‑M1/1‑73 (MQ=255)                                                                             gcgcCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGccagctcaccgtagggtacggaacgtccggtcgtggtat                                                                                                              <  2:348565‑M1/112‑40 (MQ=255)                                                                             gcgcCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTgc                                                                        <  1:91265/150‑1 (MQ=255)                                                                                      acCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCcca                                                               >  1:409076/1‑150 (MQ=255)                                                                                        cTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAg                                                                                                                               <  1:156673/84‑1 (MQ=255)                                                                                        cTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAg                                                                                                                               >  2:156673/1‑84 (MQ=255)                                                                                        cTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCccagc                                                             >  2:385441/1‑150 (MQ=255)                                                                                        cTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGCTGCCCGACCCGGCCTGCGTCAAGCTGCGCGACCccagc                                                             >  1:246035/1‑150 (MQ=255)                                                                                            gtgtACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGt                                                         >  1:18951/1‑150 (MQ=255)                                                                                              gtACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGttt                                                       <  2:18951/150‑1 (MQ=255)                                                                                                   ggTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTg                                                  >  1:223951/1‑150 (MQ=255)                                                                                                         tGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTgg                                            >  2:301115/1‑150 (MQ=255)                                                                                                            gCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGaaa                                         <  1:94690/150‑1 (MQ=255)                                                                                                               ttCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGcc                                      <  1:34801/150‑1 (MQ=255)                                                                                                                 cTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCg                                    <  1:168532/150‑1 (MQ=255)                                                                                                                  tACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGt                                   <  1:448550/150‑1 (MQ=255)                                                                                                                            ggTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTg                         >  1:420694/1‑150 (MQ=255)                                                                                                                               aaCGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGAt                      <  1:505585/150‑1 (MQ=255)                                                                                                                                  gtagtaCATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGcc                   >  1:447010/1‑150 (MQ=255)                                                                                                                                   tagtaCATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCt                  <  1:501572/150‑1 (MQ=255)                                                                                                                                       aCATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGa              >  2:507603/1‑150 (MQ=255)                                                                                                                                         aTACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgc                                                  >  1:348565‑M2/1‑39 (MQ=255)                                                                                                                                         aTACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgc                                                  <  2:348565‑M2/112‑74 (MQ=255)                                                                                                                                            ccACGACCGGACGTTCCGTACCCTACGGTGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgcccagacg          >  1:54615‑M2/1‑36 (MQ=255)                                                                                                                                            ccACGACCGGACGTTCCGTACCCTACGGTGAGCTGGccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgcccagacg          <  2:54615‑M2/149‑114 (MQ=255)                                                                                                                                                 aCCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCAcc    <  2:420694/150‑1 (MQ=255)                                                                                                                                                   cGGccagctcaccgtagggtacggaacgtccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgcccagacggcgcatgg  <  2:165449‑M1/150‑148 (MQ=255)                                                                                                                                                   cGGccagctcaccgtagggtacggaacgtccggtcgtggtatgtactacgttacccggtgtggtagaaagctcatcgaccggtacacccaggtgttcggcgcccgcctgcagcagcatgccccgggcgagcgcgcccagacggcgcatgg  >  1:63091‑M1/1‑3 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AGCATGTCGGTGCGCATGAGCTACCCCACCATGCGCCGTCTGGGCGCGCTCGCCCGGGGCATGCTGCTGCAGGCGGGCGCCGAACACCTGGGTGTACCGGTCGATGAGCTTTCTACCACACCGGGTAACGTAGTACATACCACGACCGGACGTTCCGTACCCTACGGTGAGCTGGCCGGTCGCGCCATGGACCTGCCGGTGCCCGACCCGGCCAGCGTCAAGCTGCGCGACCCCAGCCAGTTTCGCTGGATTGGAAAGCCCGTACGCCGCCTGGATGCCTACGACAAGTCCACCGG  >  NC_002947/4117751‑4118046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.