New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4350173 =	12 (0.640)	4 (0.250)	4/212	NT	32.9%	intergenic (‑181/+56)	galU/PP_3822	UTP‑glucose‑1‑phosphate uridylyltransferase/cytochrome c family protein
	?	NC_002947	4350224 =	6 (0.370)					intergenic (‑232/+5)	galU/PP_3822	UTP‑glucose‑1‑phosphate uridylyltransferase/cytochrome c family protein

CGGCGCAGTCTAATCAGGCGGCAGTCACCTTACAATGCCCCCGATAACGACCGTTGCCATCATAGAGATATCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACC  >  NC_002947/4350027‑4350289                                                                                                                                                   |                                                                                                                     cgccacgagcggccacaggacccgcggttggtagagggatccatcgagaagacgcgggtgaagtttcatgccaatgatggggttaacctgtatggtaagcaggttgatgggatgatgatcggacaagggacgggtagctgaggtaaGCCg                                                                                                                   >  1:275047‑M1/147‑150 (MQ=255)       gagcggccacaggacccgcggttggtagagggatccatcgagaagacgcgggtgaagtttcatgccaatgatggggttaacctgtatggtaagcaggttgatggggtgctgatcggacaagggacgggtagctgaggtaaGCCGGTggcg                                                                                                             >  1:446116‑M1/141‑150 (MQ=255)             aTCTGGCGGCAGTCACCTTACAATGCCCCCGATAACGACCGTTGCCATCATAGAGATATCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAACGAAATCAGCGTGCCGGTGGCGGCctct                                                                                                       <  1:347491/150‑1 (MQ=255)                  gcggcAGTCACCTTACAATGCCCCCGATAACGACCGTTGCCATCATAGAGATATCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTCGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCttagat                                                                                                  >  2:347491/1‑146 (MQ=255)                            ccTTACAATGCCCCCGATAACGACCGTTGCCATCATAGAGATATCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCAcgc                                                                                        >  1:229163/1‑150 (MQ=255)                                 cAATGCCCCCGATAACGACCGTTGCCATCATAGAGATATCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCaa                                                                                   <  2:229163/150‑1 (MQ=255)                                                              atAGAGATATCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTAcc                                                      >  2:302993/1‑150 (MQ=255)                                                                tttcatgccaatgatggggttaacctgtatggtaagcaggttgatggggtgctgatcggacaagggacgggtagctgaggtaaGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGgcc                                                                             <  1:179215‑M1/42‑1 (MQ=255)                                                                tttcatgccaatgatggggttaacctgtatggtaagcaggttgatggggtgctgatcggacaagggacgggtagctgaggtaaGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGgcc                                                                             >  2:179215‑M1/84‑125 (MQ=255)                                                                    atatCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTccc                                                >  2:16573/1‑150 (MQ=255)                                                                       tCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTg                                             >  2:360944/1‑150 (MQ=255)                                                                                    aGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCAcc                                <  1:360944/150‑1 (MQ=255)                                                                                     gTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCAccc                               <  1:16573/150‑1 (MQ=255)                                                                                        ctgtatggtaagcaggttgatggggtgctgatcggacaagggacgggtagctgaggtaaGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCaa                                                                                   <  1:311305‑M1/36‑1 (MQ=255)                                                                                        ctgtatggtaagcaggttgatggggtgctgatcggacaagggacgggtagctgaggtaaGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCaa                                                                                   >  2:311305‑M1/60‑95 (MQ=255)                                                                                        ccGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGgcc                                                                             <  2:135816/101‑1 (MQ=255)                                                                                        ccGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGgcc                                                                             >  1:135816/1‑101 (MQ=255)                                                                                                                  tACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAAcc  <  2:485318/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                     CGGCGCAGTCTAATCAGGCGGCAGTCACCTTACAATGCCCCCGATAACGACCGTTGCCATCATAGAGATATCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACC  >  NC_002947/4350027‑4350289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.