New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4350173 =	12 (0.640)	4 (0.250)	4/212	NT	32.9%	intergenic (‑181/+56)	galU/PP_3822	UTP‑glucose‑1‑phosphate uridylyltransferase/cytochrome c family protein
	?	NC_002947	4350224 =	6 (0.370)					intergenic (‑232/+5)	galU/PP_3822	UTP‑glucose‑1‑phosphate uridylyltransferase/cytochrome c family protein

ATAGAGATATCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCG  >  NC_002947/4350088‑4350369                                                                                                                                         |                                                                                                                                                  atAGAGATATCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTAcc                                                                                                                                      >  2:302993/1‑150 (MQ=255)       atatCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTccc                                                                                                                                >  2:16573/1‑150 (MQ=255)          tCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTg                                                                                                                             >  2:360944/1‑150 (MQ=255)                       aGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCAcc                                                                                                                <  1:360944/150‑1 (MQ=255)                        gTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCAccc                                                                                                               <  1:16573/150‑1 (MQ=255)                                                     tACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAAcc                                                                                  <  2:485318/150‑1 (MQ=255)                                                                                               ggcctcttggcgcgtgagcccgtcgaagaggccgccaccggcTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGaaa                                                                 <  1:179215‑M2/83‑1 (MQ=255)                                                                                               ggcctcttggcgcgtgagcccgtcgaagaggccgccaccggcTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGaaa                                                                 >  2:179215‑M2/43‑125 (MQ=255)                                                                                                     ttggcgcgtgagcccgtcgaagaggccgccaccggcTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAg                                                                                         <  1:311305‑M2/59‑1 (MQ=255)                                                                                                     ttggcgcgtgagcccgtcgaagaggccgccaccggcTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAg                                                                                         >  2:311305‑M2/37‑95 (MQ=255)                                                                                                                               cgccaccggcTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTc        >  1:446116‑M2/11‑150 (MQ=255)                                                                                                                                     cggcTTACCTCAGCTACCCGTCCCTTGTCCGATCATCATCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCg  >  1:275047‑M2/5‑150 (MQ=255)                                                                                                                                         |                                                                                                                                                  ATAGAGATATCCCAGTGTAGATAGTTCCGGGGGATCGTAAATATTGCTGTCATACATGACCGTTGGATGACAGGGAAATCAGCGTGCCGGTGGCGGCCTCTTCGACGGGCTCACGCGCCAAGAGGCCGCCACCGGCTTACCTCAGCTACCCGTCCCTTGTCCGATCAGCACCCCATCAACCTGCTTACCATACAGGTTAACCCCATCATTGGCATGAAACTTCACCCGCGTCTTCTCGATGGATCCCTCTACCAACCGCGGGTCCTGTGGCCGCTCGTGGCG  >  NC_002947/4350088‑4350369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.