New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4845173 =	21 (1.120)	4 (0.250)	4/214	NT	18.5%	intergenic (+14/‑123)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase
	?	NC_002947	4845266 =	17 (1.040)					intergenic (+107/‑30)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase

CGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACC  >  NC_002947/4845024‑4845320                                                                                                                                                      |                                                                                                                                                    gccaccgcctgacagccggggcagcagaactgccggggctgggcgaggaccacggcggtgaagcggctgccggtggggacgggcagggcgcagtggtagcagggggtcggttgggtcatagggcagacactgctcaggcagataggaaac                                                                                                                                                     <  2:67558‑M1/1‑1 (MQ=255)       ccGTTTTGTCGACCTGCTGTGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGGGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCtgtg                                                                                                                                               <  1:182281/150‑1 (MQ=255)                                gAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCgt                                                                                                                      >  1:352915/1‑149 (MQ=255)                                gAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGa                                                                                                                      <  1:388720/150‑1 (MQ=255)                                             gaggaccacggcggtgaagcggctgccggtggggacgggcagggcgcagtggtagcagggggtcggttgggtcatagggcagacactgctcaggcagataggaaaCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCaaa                                                                                                         >  2:296066‑M1/106‑150 (MQ=255)                                                                    tgccggtggggacgggcagggcgcagtggtagcagggggtcggttgggtcatagggcagacactgctcaggcagataggaaaCCCTGTGGGAGCGGGc                                                                                                                                      >  2:94974‑M1/83‑98 (MQ=255)                                                                    tgccggtggggacgggcagggcgcagtggtagcagggggtcggttgggtcatagggcagacactgctcaggcagataggaaaCCCTGTGGGAGCGGGc                                                                                                                                      <  1:94974‑M1/16‑1 (MQ=255)                                                                        tGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTcgcg                                                                              <  1:47716/150‑1 (MQ=255)                                                                         ggCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCgg                                                                             <  2:396364/150‑1 (MQ=255)                                                                          gcgcATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCggg                                                                            >  1:77990/1‑150 (MQ=255)                                                                                 gggcagggcgcagtggtagcagggggtcggttgggtcatagggcagacactgctcaggcagataggaaaCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGccc                                                                     >  2:414342‑M1/70‑150 (MQ=255)                                                                                         ttGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCcac                                                             >  1:342071/1‑150 (MQ=255)                                                                                          tGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCcaca                                                            >  1:92125/1‑150 (MQ=255)                                                                                            cAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAgg                                                          <  2:77990/150‑1 (MQ=255)                                                                                                        gtaGCCCGGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTg                                              <  2:436917/148‑1 (MQ=255)                                                                                                          aGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGcc                                            >  1:165627/1‑150 (MQ=255)                                                                                                               tggaaGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGc                                       >  1:507823/4‑150 (MQ=255)                                                                                                                   aGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAgtg                                   <  2:92125/150‑1 (MQ=255)                                                                                                                      atagggcagacactgctcaggcagataggaaaCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTc                                                                                                 >  1:397585‑M1/33‑85 (MQ=255)                                                                                                                      atagggcagacactgctcaggcagataggaaaCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTc                                                                                                 <  2:397585‑M1/53‑1 (MQ=255)                                                                                                                        ccGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGc                              >  1:35096/1‑150 (MQ=255)                                                                                                                         cGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGcc                             <  2:342071/150‑1 (MQ=255)                                                                                                                          gAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGAt                                                                                                                     >  1:171414/1‑61 (MQ=255)                                                                                                                          gAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGAt                                                                                                                     <  2:171414/61‑1 (MQ=255)                                                                                                                               ccAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAg                                                                                                        >  2:201690/1‑69 (MQ=255)                                                                                                                               ccAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAg                                                                                                        <  1:201690/69‑1 (MQ=255)                                                                                                                                cAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGAc                      >  1:235133/1‑150 (MQ=255)                                                                                                                                               cGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTg       >  1:67558/1‑150 (MQ=255)                                                                                                                                                    aTCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTCTGACCCAACCGACCCCCTGCTAcc  >  1:313239/1‑150 (MQ=255)                                                                                                                                                    aTCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTAcc  >  1:313187/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACC  >  NC_002947/4845024‑4845320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.