New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4845173 =	21 (1.120)	4 (0.250)	4/214	NT	18.5%	intergenic (+14/‑123)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase
	?	NC_002947	4845266 =	17 (1.040)					intergenic (+107/‑30)	PP_4260/PP_4261	hypothetical protein/cation‑transporting P‑type ATPase

GAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGC  >  NC_002947/4845127‑4845414                                                                                                                                            |                                                                                                                                                     gtaGCCCGGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTg                                                                                                                                            <  2:436917/148‑1 (MQ=255)   aGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGcc                                                                                                                                          >  1:165627/1‑150 (MQ=255)        tggaaGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGc                                                                                                                                     >  1:507823/4‑150 (MQ=255)            aGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAgtg                                                                                                                                 <  2:92125/150‑1 (MQ=255)                 ccGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGc                                                                                                                            >  1:35096/1‑150 (MQ=255)                  cGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGcc                                                                                                                           <  2:342071/150‑1 (MQ=255)                         cAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGAc                                                                                                                    >  1:235133/1‑150 (MQ=255)                                        cGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTg                                                                                                     >  1:67558/1‑150 (MQ=255)                                             aTCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTCTGACCCAACCGACCCCCTGCTAcc                                                                                                >  1:313239/1‑150 (MQ=255)                                             aTCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTAcc                                                                                                >  1:313187/1‑150 (MQ=255)                                                       GAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCt                                                                                      <  2:165517‑M1/150‑1 (MQ=255)                                                        AGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTg                                                                                     >  1:165517‑M1/1‑150 (MQ=255)                                                           gggcgcgcccgcgaatgcgtcagacctggaaatacctttgcctgagctatcgcattcgcgggcgtgcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGccc                                                                                  >  2:414342‑M2/82‑150 (MQ=255)                                                              CACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTc                                                                               >  2:165627‑M1/1‑150 (MQ=255)                                                                             gATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGc                                                                <  1:134620/150‑1 (MQ=255)                                                                                  cTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGATCAGTGTCTGCCCTATGACCCAGCCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCAc                                                           >  1:280395/1‑150 (MQ=255)                                                                                  cTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCAc                                                           <  2:507823/150‑1 (MQ=255)                                                                                       gaaatacctttgcctgagctatcgcattcgcgggcgtgcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTAt                                                                                                                       <  2:397585‑M2/32‑1 (MQ=255)                                                                                       gaaatacctttgcctgagctatcgcattcgcgggcgtgcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTAt                                                                                                                       >  1:397585‑M2/54‑85 (MQ=255)                                                                                        cAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGt                                                     <  2:235133/150‑1 (MQ=255)                                                                                               tttgcctgagctatcgcattcgcgggcgtgcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTc                                              >  2:296066‑M2/46‑150 (MQ=255)                                                                                                tttCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCCCTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCg                                             <  2:35096/150‑1 (MQ=255)                                                                                                     aGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGCCCCACCCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAg                                        <  2:313187/150‑1 (MQ=255)                                                                                                     aGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCCCTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAg                                        <  2:313239/150‑1 (MQ=255)                                                                                                                            gcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCa                                                                     <  1:94974‑M2/82‑1 (MQ=255)                                                                                                                            gcccgctcccacagggTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCa                                                                     >  2:94974‑M2/17‑98 (MQ=255)                                                                                                                                           gTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGCCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGc  <  2:67558‑M2/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                     GAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAGCAGTGTCTGCCCTATGACCCAACCGACCCCCTGCTACCACTGCGCCCTGCCCGTCCCCACCGGCAGCCGCTTCACCGCCGTGGTCCTCGGCCAGCCCCGGCAGTTCTGCTGCCCCGGCTGTCAGGCGGTGGC  >  NC_002947/4845127‑4845414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.