New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 485836	14 (0.750)	5 (0.280)	5/236	NT	27.5%	coding (102/867 nt)	apaH	bis(5'‑nucleosyl)‑tetraphosphatase
	?	NC_002947	= 485846	13 (0.720)					coding (92/867 nt)	apaH	bis(5'‑nucleosyl)‑tetraphosphatase

GTTGTGCCAGGCGGCCAGCAGGTGCAGGTCATGGTTGCCCAGCACGCAGACCAGTGAATGACGGATCGAGTACAGGAAGCGCAGGGTTTCCAGTGACTCGGGGCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCGGGGTTGAAACTGACGCGATCGAGCAGGCATTTGAGCGGCTGCAGGCAGCCCTGCAGGTCACCGACGGCGTAGGTGGCCATCAGTGCAGCGCTCCGGGCACTGCCAGCCGGAAGGGG  >  NC_002947/485710‑485973                                                                                                                                         |                                                                                                                                gTTGTGCCAGGCGGCCAGCAGATGCAGGTCATGGTTGCCCAGCACGCAGACCAGTGAATGACGGATCGAGTACAGGAAGCGCAGGGTTTCCAGTGACTCGGGGCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCggg                                                                                                                    <  1:297333/150‑1 (MQ=255)                                       ccAGCACGCAGACCAGTGAATGACGGATCGAGTACAGGAAGCGCAGGGTTTCCAGTGACTCGGGGCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCGGGGTTGAAACTGACGCGATCGAGCAGGCATTTGAGCGGCt                                                                              >  1:329440/1‑150 (MQ=255)                                           cACGCAGACCAGTGAATGACGGATCGAGTACAGGAAGCGCAGGGTTTCCAGTGACTCGGGGCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCGGGGTTGAAACTGACGCGATCGAGCAGGCATTTGAGCGGCTtcag                                                                          <  2:253160/150‑1 (MQ=255)                                            aCGCAGACCAGTGAATGACGGATCGAGTACAGGAAGCGCAGGGTTTTCGGTGACTC‑GGGCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCGGGGTTGAAACTGACGCGATCGAGCAGGCATTTGAGCGGCTgcaggc                                                                        >  2:71894/1‑150 (MQ=255)                                                      gTGAATGACGGATCGAGTACAGGAAGCGCAGGGTTTCCAGTGACTCGGGGCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCGGGGTTGAAACTGACGCGATCGAGCAGGCATTTGAGCGGCTGCAGGCAGCCCTGCa                                                               <  2:329440/150‑1 (MQ=255)                                                                       tACAGGAAGCGCAGGGTTTCCAGTGACTCGGGGCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCGGGGTTGAAACTGACGCGATCGAGCAGGCATTTGAGCGGCTGCAGGCAGCCCTGc                                                                >  1:39711/1‑132 (MQ=255)                                                                       tACAGGAAGCGCAGGGTTTCCAGTGACTCGGGGCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCGGGGTTGAAACTGACGCGATCGAGCAGGCATTTGAGCGGCTGCAGGCAGCCCTGc                                                                <  2:39711/132‑1 (MQ=255)                                                                                 gcAGGGTTTCCAGTGACTCGGGGCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGAcggcgg                                                                                                                     <  1:170599/69‑1 (MQ=255)                                                                                 gcAGGGTTTCCAGTGACTCGGGGCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGAcggcgg                                                                                                                     >  2:170599/1‑69 (MQ=255)                                                                                                     gggCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCGGGGTTGAAACTGACGCGATCGAGCAGGCATTTGAGc                                                                                  >  1:153490/1‑84 (MQ=255)                                                                                                     gggCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCGGGGTTGAAACTGACGCGATCGAGCAGGCATTTGAGc                                                                                  <  2:153490/84‑1 (MQ=255)                                                                                                      ggCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCGGGGTTGAAACTGACGCGATCGAGCAGGCATTTGAGCGGCTGCAGGCAGCCCTGCAGGTCACCGACGGCGTAGGTGGCCATCAGTGCAGCGCTCCGGGCACTGc               <  1:71894/150‑1 (MQ=255)                                                                                                                 aCCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCGGGGTTGAAACTGACGCGATCGAGCAGGCATTTGAGCGGCTGCAGGCAGCCCTGCAGGTCACCGACGGCGTAGGTGGCCATCAGTGCAGCGCTCCGGGCACTGCCAGCCGGAAgg    >  1:174272/1‑150 (MQ=255)                                                                                                                  ccAGGTCGCCGACCAGCCACAGGCggtcggcgccctggtcaaccgcggccccgagtcactggaaaccct                                                                                    >  2:73712‑M2/1‑24 (MQ=255)                                                                                                                  ccAGGTCGCCGACCAGCCACAGGCggtcggcgacctggtcaaccgcggccccgagtcactggaaaccct                                                                                    <  1:73712‑M2/69‑46 (MQ=255)                                                                                                                   cAGGTCGCCGACCAGCCACAGGCggtcgacggcctggtcaaccgcggccccgagtcactggaaaccctgcgcttcctgtactcgatccgtcattcactggtctgcgtgctgggcaaccatgacctgcacctgctggccgcctggcacaac  <  2:212456‑M2/150‑128 (MQ=255)                                                                                                                         gCCGACCAGCCACAGGCggtcggcgacctggtcaaccgcggccccgagtcactggaaaccctgcgcttc                                                                             >  2:145824‑M2/1‑17 (MQ=255)                                                                                                                         gCCGACCAGCCACAGGCggtcggcgacctggtcaaccgcggccccgagtcactggaaaccctgcgcttc                                                                             <  1:145824‑M2/69‑53 (MQ=255)                                                                                                                                         |                                                                                                                                GTTGTGCCAGGCGGCCAGCAGGTGCAGGTCATGGTTGCCCAGCACGCAGACCAGTGAATGACGGATCGAGTACAGGAAGCGCAGGGTTTCCAGTGACTCGGGGCCGCGGTTGACCAGGTCGCCGACCAGCCACAGGCGGTCGACGGCGGGGTTGAAACTGACGCGATCGAGCAGGCATTTGAGCGGCTGCAGGCAGCCCTGCAGGTCACCGACGGCGTAGGTGGCCATCAGTGCAGCGCTCCGGGCACTGCCAGCCGGAAGGGG  >  NC_002947/485710‑485973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.