New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2303555 =	22 (1.170)	3 (0.170)	3/230	NT	12.6%	coding (1330/1632 nt)	PP_2027	hypothetical protein
	?	NC_002947	2303598 =	21 (1.200)					coding (1287/1632 nt)	PP_2027	hypothetical protein

CCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCA  >  NC_002947/2303468‑2303740                                                                                                                                   |                                                                                                                                               cccAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGccac                                                                                                                                          >  2:479911/1‑137 (MQ=255) cccAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGccac                                                                                                                                          <  1:479911/137‑1 (MQ=255) cccAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGc                                                                                                                             >  1:23826/1‑150 (MQ=255)  ccAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGcc                                                                                                                            >  1:224519/1‑150 (MQ=255)  ccAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGcc                                                                                                                            >  2:290841/1‑150 (MQ=255)            aGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACggtg                                                                                                                  <  2:23826/150‑1 (MQ=255)                  tGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAgg                                                                                                            <  1:44338/150‑1 (MQ=255)                                   gTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGa                                                                                           >  1:56531/1‑150 (MQ=255)                                                                cgtcCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTgg                                                              <  2:224519/150‑1 (MQ=255)                                                                 gtcCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGgc                                                             >  2:415146/1‑150 (MQ=255)                                                                      gCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCgctgc                                                        >  1:401081/1‑150 (MQ=255)                                                                      gCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCgctgc                                                        >  1:223331/1‑150 (MQ=255)                                                                               gTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCac                                                                                                                         >  1:132978/1‑75 (MQ=255)                                                                               gTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCac                                                                                                                         <  2:132978/76‑2 (MQ=255)                                                                                   gCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCAc                                           >  1:325739/1‑150 (MQ=255)                                                                                   gCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCAc                                           >  1:302613/1‑150 (MQ=255)                                                                                      tGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCgg                                        <  2:223331/150‑1 (MQ=255)                                                                                       ggCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCggg                                       <  2:46165/150‑1 (MQ=255)                                                                                        gcccgttcgcggccagcggtgctgcgcacggcgcagaacgggcGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCgggg                                      >  2:217183‑M2/44‑150 (MQ=255)                                                                                         cccgttcgcggccagcggtgctgcgcacggcgcagaacgggcGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAgg                                                                                                            <  2:37054‑M2/37‑1 (MQ=255)                                                                                         cccgttcgcggccagcggtgctgcgcacggcgcagaacgggcGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAgg                                                                                                            >  1:37054‑M2/43‑79 (MQ=255)                                                                                             TTCTGCGCCGGGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCg                                 <  2:355329‑M1/150‑1 (MQ=255)                                                                                                           cagcaCCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCgg                   <  1:355329/150‑1 (MQ=255)                                                                                                           cagcaCCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGATGCCAGGGCCACCGCAGGGTGCTGGCGCTGCTGTTTTCGCCCCCCGGGGTGTCGGCGCTCAGTGCCgg                   <  1:290841/150‑1 (MQ=255)                                                                                                                   cTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCa           <  2:172251/150‑1 (MQ=255)                                                                                                                      gCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTCTTGTGGCCGACTGGGGCTTCGGCGTTGTGTGGCTGGTTGTCCTGCa        >  2:387232/1‑150 (MQ=255)                                                                                                                            aacgggcGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCa  <  1:415146‑M2/143‑1 (MQ=255)                                                                                                                                   |                                                                                                                                               CCCAGGCATCCAGCGCCTGGCGCGTAGCCTGGGGGTCGTTGGCCTGGCATGCGCGCTTGAGGTCGTCCAGCAAGGTGCGTGGGCTTGGCCCGTTCTGCGCCGTGCGCAGCACCGCTGGCCGCGAACGGGCGCGCCACCACAGGGCAAAGCCCAGCACGGTGGTCAGGGCAAACACCAGTGTGGACAGCTGCCAGGGCCACAGCAGGGTGCTGGCGCTGCTGTTGTCGCCCACCGGGGTGTCGGCGCTCAGTGCCGGGTTGTCCAGCACGTTCA  >  NC_002947/2303468‑2303740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.