| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3339160 = | 13 (0.690) | 5 (0.320) | 5/202 | NT | 29.7% | intergenic (‑119/+124) | PP_2935/ybiT | membrane protein/ABC‑F family ATPase |
| ? | NC_002947 | 3339248 = | 13 (0.840) | intergenic (‑207/+36) | PP_2935/ybiT | membrane protein/ABC‑F family ATPase | |||||
GACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGC > NC_002947/3339103‑3339396 | gACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCg < 2:442621/150‑1 (MQ=255) agGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATc > 2:375188/1‑150 (MQ=255) ggCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATc‑c > 2:370476/1‑150 (MQ=255) ttCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCTGGCCATCTCG‑GATGGCCGGGc < 1:329560/150‑1 (MQ=39) cgGGCCGTGCCGGTCGGTGGGATGGCGATGTCCTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGACCAATAACTGCGCCGTCCCCGTGGGCGGGGGCAAGCCCGCGGGCAGACCCGGCCATC‑CTATAGGGTTATGCCGTcc < 2:260805/150‑1 (MQ=255) ggCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCa > 1:60437/1‑150 (MQ=255) ctcttcgcgggcttgcccgctcccacagggaccgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCatcaat > 1:214763‑M2/89‑125 (MQ=255) ctcttcgcgggcttgcccgctcccacagggaccgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCatcaat < 2:214763‑M2/37‑1 (MQ=255) GCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTAc > 1:370476‑M1/1‑150 (MQ=255) cccacagggaccgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagGCCCGGCCATC‑CGAGAt < 1:247921‑M2/17‑1 (MQ=255) cccacagggaccgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagGCCCGGCCATC‑CGAGAt > 2:247921‑M2/68‑84 (MQ=255) tcCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCAATGTGGAAGCGGGCAAGCCCGCGAAGAGGCCCGTCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCt > 1:216445/1‑150 (MQ=255) ccacagggaccgcacaggtattggacgcttgtggggccttgggagagcgggcaggcccgcgaagagGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCt > 1:136592‑M2/67‑150 (MQ=255) ccACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTccacc > 1:51316/1‑150 (MQ=255) cacaAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTa > 1:302968/1‑130 (MQ=255) cacaAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTa < 2:302968/130‑1 (MQ=255) aGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCcaccacacc < 2:233943/150‑1 (MQ=255) aTACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCg > 2:265985/1‑150 (MQ=255) ccTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGatgatg > 1:355400/1‑150 (MQ=255) cTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATgc < 2:355400/150‑1 (MQ=255) ggcaagcccgcgaagagGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCcaccacacc > 1:157446‑M2/18‑116 (MQ=255) ggcaagcccgcgaagagGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCcaccacacc < 2:157446‑M2/99‑1 (MQ=255) ttgcccgcgaagagGCCCGGCCATC‑CGAGGTGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGcgac < 1:348271‑M2/136‑1 (MQ=255) ccgcgaagagGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGGTGATGCGCGTGGCCAGCGACGaca > 1:159889‑M2/11‑150 (MQ=255) ccgcgaagagGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGaca < 2:60437‑M2/140‑1 (MQ=255) aagagGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAAc > 2:378042‑M2/6‑150 (MQ=255) gGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTcgc < 1:375188‑M2/149‑1 (MQ=255) | GACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATC‑CGAGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGC > NC_002947/3339103‑3339396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |