New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4721206	16 (0.540)	6 (0.210)	6/268	2.6	26.5%	coding (436/726 nt)	PP_4178	dienelactone hydrolase family protein
	?	NC_002947	= 4721212	18 (0.630)					coding (430/726 nt)	PP_4178	dienelactone hydrolase family protein

CCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAGGCACAGCAGCCACCGAAGCAGAAGCCGAAGGTGGCCACCTTGCCAGGCTCCAGCAACGCCTTCGACTGCCCCAGCAATTGCGCCAAGGCCTCCTGC  >  NC_002947/4721068‑4721351                                                                                                                                           |                                                                                                                                                  ccTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGtcgttccacgg                                                                                                                                        >  2:525597‑M1/1‑139 (MQ=255) ccTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGAcacgg                                                                                                                                        <  2:141078‑M2/150‑6 (MQ=255)    tGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGtcgttccacggcac                                                                                                                                     <  1:525597‑M1/150‑15 (MQ=255)      gCCGCGTTCATCTCGTCTTTGAATGCCGGCAGCTGCTCTTTATGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCcgca                                                                                                                                   <  2:147452/150‑1 (MQ=255)               aTCTCGTCATCGAATGCCGGCAGCTGGTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGACCGACACGGCCGCACGCAGGTCg                                                                                                                          >  2:157041/1‑150 (MQ=255)                tctcGTCTTCGGTTGCCGCCAGCGGCACTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCgg                                                                                                                         >  2:175453/1‑150 (MQ=255)                               ccGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACTATGCAACCCCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGTGTGTCCAGGGTGCCGTGGAACGACACGGCCGCATGCAGGTCGGCGCCGCTACGGGCCa                                                                                                          <  2:65405/150‑1 (MQ=255)                                      ctgctCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGAcacgg                                                                                                                                        >  1:357256‑M2/1‑108 (MQ=255)                                      ctgctCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGAcacgg                                                                                                                                        <  2:357256‑M2/113‑6 (MQ=255)                                      ctgctCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCaa                                                                                                   <  2:291489/150‑1 (MQ=255)                                       tgctCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAg                                                                                                  <  1:141078/150‑1 (MQ=255)                                       tgctCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAg                                                                                                  >  2:449139/1‑150 (MQ=255)                                                   aCCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAGGCACAGCAGCCa                                                                                      >  1:172049/1‑150 (MQ=255)                                                           aTCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGgaacgacacggcaccctggacacgccgaatcctgaagat                                                                                                            <  2:646301‑M1/120‑40 (MQ=255)                                                           aTCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGgaacgacacggcaccctggacacgccgaatcctgaagat                                                                                                            >  1:646301‑M1/1‑81 (MQ=255)                                                            tCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAGGCACAGCAGCCACCGAAGCAg                                                                             >  1:626974/1‑150 (MQ=255)                                                                      cATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCGTGTTCAGGATTCGGGGTGGCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAGGCACAGCAGCCACCGAAGCAGAAGcccagcg                                                                   >  2:322214/1‑145 (MQ=255)                                                                                cAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAGGCACAGCAGCCACCGAAGCAGAAGCCGAAGGTGGCCACCtt                                                         >  2:241108/1‑150 (MQ=255)                                                                                       gAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAGGCACAGCAGCCACCGAAGCAGAAGCCGAAGGTGGCCACCTTGCCAGGc                                                  >  1:601843/1‑150 (MQ=255)                                                                                           ccTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAGGCACAGCAGCCACCGAAGCAGAAGCCGAAGGTGGCCACCTTGCCAGGCTCCa                                              <  1:449139/150‑1 (MQ=255)                                                                                                    gcTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGtcgttccacggca                                                                                                                                      <  2:198878‑M1/53‑14 (MQ=255)                                                                                                    gcTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGtcgttccacggca                                                                                                                                      >  1:198878‑M1/1‑40 (MQ=255)                                                                                                           aTCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGTCGTTCcacggcaccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgat                                                            >  1:646301‑M2/1‑39 (MQ=255)                                                                                                           aTCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGTCGTTCcacggcaccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgat                                                            <  2:646301‑M2/120‑82 (MQ=255)                                                                                                              ttCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAGGCACAGCAGCCACCGAAGCAGAAGCCGAAGGTGGCCACCTTGCCAGGCTCCAGCAACGCCTTCGACTGccc                           >  2:287817/1‑150 (MQ=255)                                                                                                                        ggCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAGGCACAGCAGCCACCGAAGCAGAAGCCGAAGGTGGCCACCTTGCCAGGCTCCAGCAACGCCTTCGACTGCCCCAGCAATTgc                 <  1:15488/150‑1 (MQ=255)                                                                                                                              tCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAGGCACAGCAGCCACCGAAGCAGAAGCCGAAGGTGGCCACCTTGCCAGGCTCCAGCAACGCCTTCGACTGCCCCAGCAATTGCGCCAAg           <  1:287817/150‑1 (MQ=255)                                                                                                                                    gTGCCGTGGAACGAcacggcaccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaagagcagctgccggcattcgaagacgagatgaacgcggcca     <  1:525597‑M2/150‑137 (MQ=255)                                                                                                                                     tGCCGTGGAACGAcacggcaccctggacacgccgaatcctgaagatgccaagc                                                                                                     <  2:198878‑M2/53‑41 (MQ=255)                                                                                                                                     tGCCGTGGAACGAcacggcaccctggacacgccgaatcctgaagatgccaagc                                                                                                     >  1:198878‑M2/1‑13 (MQ=255)                                                                                                                                       ccGTGtcgttccacggcaccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaagagcagctgccggcattcgaagacgagatgaacgcggccaagg  <  2:141078‑M1/150‑146 (MQ=255)                                                                                                                                       ccGTGtcgttccacggcaccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaagagcag                                       <  2:357256‑M1/113‑109 (MQ=255)                                                                                                                                       ccGTGtcgttccacggcaccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaagagcag                                       >  1:357256‑M1/1‑5 (MQ=255)                                                                                                                                       ccGTGGAACGAcacggcaccctggacacgccgaatcctgaagatgccaagcgcatcaagggctcggtgctggtgttgcatggtgcctccgatccattggtgcctaaagagcagctgccggcattcgaagacgagatgaacgcggccaagg  >  2:525597‑M2/1‑11 (MQ=255)                                                                                                                                           |                                                                                                                                                  CCTTGGCCGCGTTCATCTCGTCTTCGAATGCCGGCAGCTGCTCTTTAGGCACCAATGGATCGGAGGCACCATGCAACACCAGCACCGAGCCCTTGATGCGCTTGGCATCTTCAGGATTCGGCGTGTCCAGGGTGCCGTGGAACGACACGGCCGCACGCAGGTCGGCGCCGCTACGGGCCAGTTCCAAGGCACAGCAGCCACCGAAGCAGAAGCCGAAGGTGGCCACCTTGCCAGGCTCCAGCAACGCCTTCGACTGCCCCAGCAATTGCGCCAAGGCCTCCTGC  >  NC_002947/4721068‑4721351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.