New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 60790	39 (0.860)	8 (0.180)	7/242	NT	17.8%	intergenic (‑182/‑41)	PP_0051/PP_0052	sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein
	?	NC_002947	= 60808	36 (0.820)					intergenic (‑200/‑23)	PP_0051/PP_0052	sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein

TCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/60713‑60790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcc‑CCGCCTTGTAC‑AGGCGTAGGCAGTGACAGGAGCTTTATCAAGATGCATGCCAGGCTTTTTGCCACTCACTG  <  NC_002947/60808‑60738                                                                                                                                                         TCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCC‑CCGCCTTGTAC‑AGGCGTAGG                                                     <  1:129087/98‑1 TCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCC‑CCGCCTTGTAC‑AGGCGTAGG                                                     >  2:129087/1‑98             CGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCC‑CCGCCTTGTAC‑AGGCGTAGGC                                                    <  1:854105/87‑1             CGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCC‑CCGCCTTGTAC‑AGGCGTAGGC                                                    >  2:854105/1‑87                          CAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCC‑CCGCCTTGTAC‑AGGCGTAGGCA                                                   <  1:844254/75‑1                          CAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCC‑CCGCCTTGTAC‑AGGCGTAGGCA                                                   >  2:844254/1‑75                                                                GCTCCTGTCACTGCCTACGCC‑TGTACAAGGCGTAGGCAGTGACAGGAGCTTTATCAAGATGCATGCCAGGCTTTTTGCCACTCACTG  <  1:1138107/87‑1                                                                GCTCCTGTCACTGCCTACGCC‑TGTACAAGGCGTAGGCAGTGACAGGAGCTTTATCAAGATGCATGCCAGGCTTTTTGCCACTCACTG  >  2:1138107/1‑87                                                                                                                                                         TCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/60713‑60790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcc‑CCGCCTTGTAC‑AGGCGTAGGCAGTGACAGGAGCTTTATCAAGATGCATGCCAGGCTTTTTGCCACTCACTG  <  NC_002947/60808‑60738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.