| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 60790 | 39 (0.860) | 8 (0.180) | 7/242 | NT | 17.8% | intergenic (‑182/‑41) | PP_0051/PP_0052 | sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein |
| ? | NC_002947 | = 60808 | 36 (0.820) | intergenic (‑200/‑23) | PP_0051/PP_0052 | sigma‑54 dependent transcriptional regulator/beta‑lactamase domain‑containing protein | |||||
CTGCCAAACACTGCCATTGGCTGTCAGTCGACTGCCACCTGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGACCATCAGCTACCTGGTCATGGACCGTGAAACCCGACAATGCGCATTGATCGAC > NC_002947/60648‑60938 | cTGCCAAACACTGCCATTGGCTGTCAGTCGACTGCCACCTGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCt < 2:381825/150‑1 (MQ=255) tGCCAAACACTGCCATTGGCTGTCAGTCGACTGCCACCTGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑g > 2:847578/1‑150 (MQ=255) tGCCAAACACTGCCATTGGCTGTCAGTCGACTGCCACCTGGGCTGCCAGTTTTGCCCGCAGCGGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑g > 2:625981/1‑150 (MQ=255) aaaCACTGCCATTGGCTGTCAGTCGACTGCCACCTGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACa > 1:501851/1‑150 (MQ=255) tGCCATTGGCTGTCAGTCGACTGCCACCTGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAggcgg > 1:712322/1‑150 (MQ=255) cAGTCGACTGCCACCTGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTg < 2:453916/150‑1 (MQ=255) cAGTCGACTGCCACCTGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTg < 2:453677/150‑1 (MQ=255) tgACTGCCAACTGGGCTGCCACTTTTGCCCGCATCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCGTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTTgaga < 1:283669/149‑1 (MQ=255) gACTGCCACCTGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGaa < 1:1087418/150‑1 (MQ=255) ccACCTGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGtga > 2:1143341/1‑150 (MQ=255) aCCTGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGtgatg > 2:1032539/1‑150 (MQ=255) tGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTgg < 1:1072454/136‑1 (MQ=255) tGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTgg > 2:1072454/1‑136 (MQ=255) tGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAggcgg < 2:573042/117‑1 (MQ=255) tGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAggcgg > 1:573042/1‑117 (MQ=255) ccAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGca > 2:49602/1‑150 (MQ=255) aGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGcaac < 1:1143341/150‑1 (MQ=255) tttGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCaacaac < 1:49602/150‑1 (MQ=255) ttGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAAcc > 1:133519/1‑150 (MQ=255) ccGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCa > 2:497135/1‑150 (MQ=255) gCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCACGTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACg > 2:1135674/1‑150 (MQ=255) tCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCccgccttgtacaggcgtagg > 2:129087‑M1/1‑78 (MQ=255) tCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCccgccttgtacaggcgtagg < 1:129087‑M1/98‑21 (MQ=255) gCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCtt > 1:36329/1‑150 (MQ=255) cGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCccgccttgtacaggcgtaggc < 1:854105‑M1/87‑22 (MQ=255) cGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCccgccttgtacaggcgtaggc > 2:854105‑M1/1‑66 (MQ=255) ggTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAg > 2:59399/1‑150 (MQ=255) ggTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAg < 1:939870/150‑1 (MQ=255) cTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAggcgg < 2:960998/76‑1 (MQ=255) cTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAggcgg > 1:960998/1‑76 (MQ=255) tGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCAc > 2:1082352/1‑121 (MQ=255) tGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCAc < 1:1082352/121‑1 (MQ=255) gCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGa < 2:712322/150‑1 (MQ=255) gCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGa < 1:921386/150‑1 (MQ=255) cAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCccgccttgtacaggcgtaggca > 2:844254‑M1/1‑53 (MQ=255) cAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCccgccttgtacaggcgtaggca < 1:844254‑M1/75‑23 (MQ=255) cAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCTTGTACA‑GGCGTaggcagtgacaggagc > 2:1138107‑M2/1‑71 (MQ=255) cAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCTTGTACA‑GGCGTaggcagtgacaggagc < 1:1138107‑M2/87‑17 (MQ=255) gagtgGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACCAGGCGACCTCGACCATCa < 1:1135674/150‑1 (MQ=255) aaaGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGACCATCAGCTACCTgg < 1:497135/150‑1 (MQ=255) cTGGCATGCATCTTGATCACGCTCCTGTCGGTTTCTGCTCCG‑GTACACGGCGGGGCGGGTATGATGCCCCAAGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGACCATCAGCTACCTGGTCATg < 1:625981/150‑1 (MQ=255) atCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGACCATCAGCTACCTGGTCATGGACCGTGaa > 2:448724/1‑150 (MQ=255) gATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGACCATCAGCTACCTGGTCATGGACCGTGAAACCCg > 2:663778/1‑150 (MQ=255) aTAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGACCATCAGCTACCTGGTCATGGACCGTGAAACCCGa < 2:533012/150‑1 (MQ=255) aaGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGACCATCAGCTACCTGGTCATGGACCGTGAAACCCGACaa < 2:501851/150‑1 (MQ=255) gCTCCTGTCACTGCCtacgcctgtacaaggcgtaggcagtgacaggagctttatcaagatgcatgccaggctttttgccactcactg < 1:1138107‑M1/87‑73 (MQ=255) gCTCCTGTCACTGCCtacgcctgtacaaggcgtaggcagtgacaggagctttatcaagatgcatgccaggctttttgccactcactg > 2:1138107‑M1/1‑15 (MQ=255) tCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGACCATCAGCTACCTGGTCATGGACCGTGAAACCCGACAATgcg < 1:1032539/150‑1 (MQ=255) gTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGACCATCAGCTACCTGGTCATGGACCGTGAAACCCGACAATGCGCAtt > 1:158827/1‑150 (MQ=255) cTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGACCATCAGCTACCTGGTCATGGACCGTGAAACCCGACAATGCGCATTGATc < 1:59399/150‑1 (MQ=255) tGCCTACGCCT‑GTACAAGGCGGggcagtgacaggagctttatcaagatgcatgccaggctttttgccactcactg < 1:844254‑M2/75‑54 (MQ=255) tGCCTACGCCT‑GTACAAGGCGGggcagtgacaggagctttatcaagatgcatgccaggctttttgccactcactg > 2:844254‑M2/1‑22 (MQ=255) gCCTACGCCT‑GTACAAGGCGGggcagtgacaggagctttatcaagatgcatgccaggctttttgccactcactggccagtaaaaccg > 2:854105‑M2/1‑21 (MQ=255) gCCTACGCCT‑GTACAAGGCGGggcagtgacaggagctttatcaagatgcatgccaggctttttgccactcactggccagtaaaaccg < 1:854105‑M2/87‑67 (MQ=255) ccTACGCCT‑GTACAAGGCGGggcagtgacaggagctttatcaagatgcatgccaggctttttgccactcactggccagtaaaaccggccagttgcaga > 2:129087‑M2/1‑20 (MQ=255) ccTACGCCT‑GTACAAGGCGGggcagtgacaggagctttatcaagatgcatgccaggctttttgccactcactggccagtaaaaccggccagttgcaga < 1:129087‑M2/98‑79 (MQ=255) ccTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGACCATCAGCTACCTGGTCATGGACCGTGAAACCCGACAATGCGCATTGATCGAc > 2:147146/1‑150 (MQ=255) | CTGCCAAACACTGCCATTGGCTGTCAGTCGACTGCCACCTGGGCTGCCAGTTTTGCCCGCAGCTGTCTGCAACTGGCCGGTTTTACTGGCCAGTGAGTGGCAAAAAGCCTGGCATGCATCTTGATAAAGCTCCTGTCACTGCCTACGCCT‑GTACAAGGCGGGGCGGATAAATTGGAGAACGTGATGATCATCGGCAACAACCTTCACGTGGACGCCTTCTACGACGAGGCGACCTCGACCATCAGCTACCTGGTCATGGACCGTGAAACCCGACAATGCGCATTGATCGAC > NC_002947/60648‑60938 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |