| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 80992 | 57 (1.260) | 6 (0.140) | 6/228 | NT | 8.6% | intergenic (+49/‑85) | tsaC/PP_5425 | threonylcarbamoyl‑AMP synthase/hypothetical protein |
| ? | NC_002947 | = 81051 | 75 (1.810) | intergenic (+108/‑26) | tsaC/PP_5425 | threonylcarbamoyl‑AMP synthase/hypothetical protein | |||||
TTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/80930‑80992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGCCAGGCCTGTGGATTGGTATCAACCCGGGCGAACGACTTCGCCGGTTGCCAG < NC_002947/81051‑80911 TTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTC > 1:1174693/1‑130TTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTC < 2:1174693/130‑1 ACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGC < 1:1121595/125‑1 ACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGC > 2:1121595/1‑125 GACTCGGGCCCCTGTGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGC > 1:870402/1‑90 GACTCGGGCCCCTGTGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGC < 2:870402/90‑1 GGGAGCGGGCATGCCCGCGAACACGGGCGAAGCTCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGCCAGGCCTGTGGATTGGTATCAACCCGGGCGAACGACTTCGCCGGTTGCCA < 2:466911/150‑1 GGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGCCAGGCCTGTGGATTGGTATCAACCCGGGCGAACGACTTCGCCGGTTGCCAG < 1:1189231/150‑1 GAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGC < 1:1172079/98‑1 GAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGC > 2:1172079/1‑98 AGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGCCAGGCCTGTGGATTGGTATCAACCCGGGCGAACGACTTCGCCGGTT < 1:413130/143‑1 AGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGCCAGGCCTGTGGATTGGTATCAACCCGGGCGAACGACTTCGCCGGTT > 2:413130/1‑143 TTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/80930‑80992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGCCAGGCCTGTGGATTGGTATCAACCCGGGCGAACGACTTCGCCGGTTGCCAG < NC_002947/81051‑80911 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |