New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 80992	57 (1.260)	6 (0.140)	6/228	NT	8.6%	intergenic (+49/‑85)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
	?	NC_002947	= 81051	75 (1.810)					intergenic (+108/‑26)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein

CTGGTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGG  >  NC_002947/80857‑81140                                                                                                                                        |                                                                                                                                                     cTGGTGCTTGGCGGGGCGCTGGGGGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCgaagaa                                                                                                                                        >  2:577457/1‑150 (MQ=255)  tGGTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCAGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAAt                                                                                                                                       >  2:948500/1‑150 (MQ=255)        ttGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCgaaga                                                                                                                                         >  1:705093/1‑142 (MQ=255)        ttGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCgaaga                                                                                                                                         <  2:705093/142‑1 (MQ=255)          ggCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCg                                                                                                                               <  2:1154391/150‑1 (MQ=255)               ggCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGCCACGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGcc                                                                                                                          >  2:221876/1‑150 (MQ=255)                      ggcgggcgGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACg                                                                                                                   >  1:5037/1‑150 (MQ=255)                            cggAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGgcgcgc                                                                                                                                                  >  1:495515/1‑113 (MQ=255)                            cggAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGgcgcgc                                                                                                                                                  <  2:495515/113‑1 (MQ=255)                                agaaCCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGccc                                                                                                         <  1:1017693/150‑1 (MQ=255)                                   aCCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCgaa                                                                                                                                           <  2:286958/113‑1 (MQ=255)                                   aCCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCgaa                                                                                                                                           >  1:286958/1‑113 (MQ=255)                                   aCCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAACACAACTCGGTGCCAGGCACGGGCTTCGCCCgtg                                                                                                      >  2:1059333/1‑150 (MQ=255)                                     ccGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGtt                                                                                                    >  1:335126/1‑150 (MQ=255)                                          tgtgATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCgg                                                                                               <  2:5037/150‑1 (MQ=255)                                          tgtgATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCgg                                                                                               >  1:784892/1‑150 (MQ=255)                                             gATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACgg                                                                                                                  >  2:297069/1‑128 (MQ=255)                                             gATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACgg                                                                                                                  <  1:297069/128‑1 (MQ=255)                                                       cTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATgcccgctcc                                                                                  <  1:1189231‑M2/150‑10 (MQ=255)                                                        tGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGAGCTTCGCCCGTGTTCGCGGGCATgcccgctccc                                                                                 <  2:466911‑M2/150‑11 (MQ=255)                                                            aaCCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATgcccgct                                                                                    <  1:413130‑M2/143‑8 (MQ=255)                                                            aaCCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATgcccgct                                                                                    >  2:413130‑M2/1‑136 (MQ=255)                                                            aaCCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGaaa                                                                             >  1:1000444/1‑150 (MQ=255)                                                               cGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAgtg                                                                          >  2:271742/1‑150 (MQ=255)                                                                  cGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCa                                                                       <  1:577457/150‑1 (MQ=255)                                                                      gTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGaa                                                                              <  2:276024/139‑1 (MQ=255)                                                                      gTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGaa                                                                              >  1:276024/1‑139 (MQ=255)                                                                         gTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACAt                                                                >  2:1191757/1‑150 (MQ=255)                                                                          ttCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctc                                                                                   <  2:1174693‑M1/130‑68 (MQ=255)                                                                          ttCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctc                                                                                   >  1:1174693‑M1/1‑63 (MQ=255)                                                                           tCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGTGCTCGTGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGa                                                              <  2:1189231/150‑1 (MQ=255)                                                                             gCCGGGGTTGATCCCAATCCCCGGGCCTGGCTCGGGACCCGGGCCCCTGTAGGAGCGCGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACCGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACt                                                            <  2:339011/150‑1 (MQ=25)                                                                              cccGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAAGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTg                                                           >  1:1127589/1‑150 (MQ=255)                                                                               cggggTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCgaaga                                                                                                                                         <  2:19750/69‑1 (MQ=255)                                                                               cggggTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCgaaga                                                                                                                                         >  1:19750/3‑71 (MQ=255)                                                                                 gggTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGccc                                                        >  2:420821/1‑150 (MQ=255)                                                                                   gTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCtt                                                      >  1:1179465/1‑150 (MQ=255)                                                                                     tGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGAGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCg                                                    <  1:466911/150‑1 (MQ=255)                                                                                         aCCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccacaggggc                                                                         <  1:1121595‑M1/125‑78 (MQ=255)                                                                                         aCCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccacaggggc                                                                         >  2:1121595‑M1/1‑48 (MQ=255)                                                                                           cAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGGGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCAc                                              >  1:490120/1‑150 (MQ=255)                                                                                           cAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCAc                                              >  1:782543/1‑150 (MQ=255)                                                                                            aaTCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACg                                             >  2:1091920/1‑150 (MQ=255)                                                                                               ccACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGttt                                          <  1:1091920/150‑1 (MQ=255)                                                                                               ccACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAACACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGttt                                          <  1:1059333/150‑1 (MQ=255)                                                                                                cacaGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTg                                         >  2:112137/1‑150 (MQ=255)                                                                                                cacaGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGGCTCCGGGGGCAGGCCCGCTCCCGAAAGTGGGACGCACAGGACTGCCCCTCGCAGCACGCTTg                                         >  2:285688/1‑150 (MQ=255)                                                                                                 acaGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTgg                                        <  2:782543/150‑1 (MQ=255)                                                                                                          gCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATgcccgctc                                                                                   <  1:1172079‑M2/98‑9 (MQ=255)                                                                                                          gCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATgcccgctc                                                                                   >  2:1172079‑M2/1‑90 (MQ=255)                                                                                                           cTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGTCCTTCGCAGCACGTTTGGTCGCgatgat                              <  1:431784/150‑1 (MQ=255)                                                                                                            tCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGatgatg                             >  1:797590/1‑150 (MQ=255)                                                                                                              gggACTCGGGCCGCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCAGGCCCGCTCCAGAAAGTGTCACGCACATGACTGCCCTTCGCAGCCCGTTTGGTCGCGATGATGGc                           >  2:1067762/1‑150 (MQ=255)                                                                                                              gggACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCGTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGACGTTAGCAGCACGTTTGGTCGCGATGATggg                           >  1:410276/1‑149 (MQ=255)                                                                                                                gACTCGGGCCCCTGTGGGAGCGGGCatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgc                                                                                     >  1:870402‑M1/1‑25 (MQ=255)                                                                                                                gACTCGGGCCCCTGTGGGAGCGGGCatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgc                                                                                     <  2:870402‑M1/90‑66 (MQ=255)                                                                                                                gACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTa                         >  1:233643/1‑150 (MQ=255)                                                                                                                gACTCGGGCCCCTGTAAGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGGAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTa                         >  1:644432/1‑150 (MQ=255)                                                                                                                 aCTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGt                                       >  1:489208/1‑135 (MQ=255)                                                                                                                 aCTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGt                                       <  2:489208/135‑1 (MQ=255)                                                                                                                 aCTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTAt                        >  2:955959/1‑150 (MQ=255)                                                                                                                   tCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATgg                      >  2:1155066/1‑150 (MQ=255)                                                                                                                      ggCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTaa                   >  1:1175808/1‑150 (MQ=255)                                                                                                                       gCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATgcccgctcccacaggggcccgagtcccgagccaggcctgtggattggt                                           <  1:1121595‑M2/125‑49 (MQ=255)                                                                                                                       gCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATgcccgctcccacaggggcccgagtcccgagccaggcctgtggattggt                                           >  2:1121595‑M2/1‑77 (MQ=255)                                                                                                                       gCCCCTGTGGCCGTCGGCGCGACCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAAc                  <  1:849568/150‑1 (MQ=38)                                                                                                                          ccTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGGTGATGGCTATGGTAACGAg               >  1:776612/1‑150 (MQ=255)                                                                                                                          ccTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAg               >  2:728980/1‑150 (MQ=255)                                                                                                                          ccTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAg               <  1:1191757/150‑1 (MQ=255)                                                                                                                           cTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTAt                        <  2:815374/140‑1 (MQ=255)                                                                                                                           cTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTAt                        >  1:815374/1‑140 (MQ=255)                                                                                                                           cTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAgg              <  2:335126/150‑1 (MQ=255)                                                                                                                           cTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAgg              >  1:322420/1‑150 (MQ=255)                                                                                                                               gggAGCGGGCatgcccgcgaacacgggcgaagctcgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccacaggggcccgagtcccgagccaggcctgtggattggtatcaacccgggcgaacgacttcgccggttgcca          <  2:466911‑M1/150‑141 (MQ=255)                                                                                                                                ggAGCGGGCatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccacaggggcccgagtcccgagccaggcctgtggattggtatcaacccgggcgaacgacttcgccggttgccag         <  1:1189231‑M1/150‑142 (MQ=255)                                                                                                                                 gAGCGGGCatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccacaggggcccgagtcccgagc                                                            >  2:1172079‑M1/1‑8 (MQ=255)                                                                                                                                 gAGCGGGCatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccacaggggcccgagtcccgagc                                                            <  1:1172079‑M1/98‑91 (MQ=255)                                                                                                                                 gAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATgcccgctcccacaggggcccgagtcccgagccaggcctgtggattggtatcaacccgggcgaa                            >  1:1174693‑M2/1‑67 (MQ=255)                                                                                                                                 gAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATgcccgctcccacaggggcccgagtcccgagccaggcctgtggattggtatcaacccgggcgaa                            <  2:1174693‑M2/130‑64 (MQ=255)                                                                                                                                  aGCGGGCatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccacaggggcccgagtcccgagccaggcctgtggattggtatcaacccgggcgaacgacttcgccggtt              <  1:413130‑M1/143‑137 (MQ=255)                                                                                                                                  aGCGGGCatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccacaggggcccgagtcccgagccaggcctgtggattggtatcaacccgggcgaacgacttcgccggtt              >  2:413130‑M1/1‑7 (MQ=255)                                                                                                                                   gCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATgcccgctcccacaggggcccgagtc                                                                  >  1:870402‑M2/1‑65 (MQ=255)                                                                                                                                   gCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATgcccgctcccacaggggcccgagtc                                                                  <  2:870402‑M2/90‑26 (MQ=255)                                                                                                                                    cGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATg     <  2:233643/150‑1 (MQ=255)                                                                                                                                    cGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATg     <  1:1155066/150‑1 (MQ=255)                                                                                                                                     gggCGCGCCCGCGAAGTATACAACTCGGTGCCGGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGCTGGCTATGGTAACGAGGTCTTCGATGa    <  1:285688/150‑1 (MQ=255)                                                                                                                                     gggCCCGCCCGCTAAGAATCCAACCCGGCGCCAGGTCCGGGTCTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGa    <  1:948500/150‑1 (MQ=255)                                                                                                                                      ggCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAg   <  2:784892/150‑1 (MQ=255)                                                                                                                                       gcgcgcCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGcaca                                                                 <  1:899745/87‑1 (MQ=255)                                                                                                                                       gcgcgcCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGcaca                                                                 >  2:899745/1‑87 (MQ=255)                                                                                                                                       gcgcgcCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACACTGAGACGCGATGATGGCTATGGTAACGAGGTCTTCGATGAgg  >  1:616288/1‑150 (MQ=39)                                                                                                                                        |                                                                                                                                                     CTGGTGCTTGGCGGGGCGCTGGGCGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGG  >  NC_002947/80857‑81140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.