New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 403253	56 (1.240)	7 (0.170)	7/228	NT	11.5%	intergenic (‑53/+116)	msrA/PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
	?	NC_002947	= 403315	56 (1.350)					intergenic (‑115/+54)	msrA/PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein

AGTGGAACTCGGGCAGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/403098‑403253 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaCGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGT  <  NC_002947/403315‑403175                                                                                                                                                                                                                                                                                                             AGTGGAACTCGGGCAGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCG                                                                                                                                                     <  1:172913/150‑1   TGGAACTCGGGCAGGCTCATTGGCGTGTCGCCGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCG                                                                                                                                                   >  2:743314/1‑150    GGAACTCGGGCAGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGG                                                                                                                                                  >  2:62987/1‑150     GAACTCGGGCAGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGG                                                                                                                                                 <  2:103897/150‑1                 GCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCACGCCCGCTCC                                                                                                                                     >  1:883383/1‑150                   TCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCCCTTTCGCGGGCACGCCCGCTCC                                                                                                                                     <  2:472228/150‑1                                           GGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGG                                                                                                                                                  <  1:818023/111‑1                                           GGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGG                                                                                                                                                  >  2:818023/1‑111                                                      GCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGCGCC‑‑TTCGCGGGCATGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTAC                                                                                                <  2:318616/150‑1                                                          TGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGT                                                                                            <  1:174983/150‑1                                                                TGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGC                                                                                      <  2:883383/150‑1                                                                                CAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGG                                                                                    <  1:130519/136‑1                                                                                CAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGG                                                                                    >  2:130519/1‑136                                                                                                                                                      TCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGT  <  1:1190542/150‑1                                                                                                                                                      TCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGT  <  1:141262/150‑1                                                                                                                                                      TCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGT  <  2:220042/150‑1                                                                                                                                                                                                                                                                                                             AGTGGAACTCGGGCAGGCTCATTGGCGTGTCGCGGCCAGGCAGGGCCTGTTCCGCAGTGGGCATGACGTTTTTGTTCACCAGGATTTCCGAACGCAGGACCATGGCCGTTCCTCTGTGTTTATTCAGTGGGGTAGGGGTTTGGGCC‑‑TTCGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/403098‑403253 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcaCGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCATGCCCGCGAAGGCCCAAACCCCTACCCCACTGAATAAACACAGAGGAACGGCCATGGTCCTGCGTTCGGAAATCCTGGT  <  NC_002947/403315‑403175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.