New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	625684 =	45 (1.000)	3 (0.070)	3/234	NT	6.6%	intergenic (‑65/+28)	ppa/mtfA	inorganic pyrophosphatase/glucose‑regulated peptidase
	?	NC_002947	625723 =	42 (0.990)					coding (805/816 nt)	mtfA	glucose‑regulated peptidase

AAGCCACGCCTGACGGGCCCGCACATCAGGCCAAGCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/625724‑625684 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtggcTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAGGTCAGGGGCACTAAAGAAGTACTCGC  >  NC_002947/625723‑625860                                                                                                                                                                                     AAGCCACGCCTGACGGGCCCGCACATCAGGCCAAGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAG                               >  1:1166410/1‑150  AGCCACGCCTGACGGGCCCGCACATCAGGCCAAGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGC                              >  1:752314/1‑150    CCACGCCTGACGGGCCCGCACATCAGGCCAAGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAG                            <  2:1166410/150‑1                                        GCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAGGTCAGGGGCACTAAAGAAGTACTCGC  <  1:321711/140‑1                                        GCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAGGTCAGGGGCACTAAAGAAGTACTCGC  >  2:321711/1‑140                                                                                                                                                                                     AAGCCACGCCTGACGGGCCCGCACATCAGGCCAAGCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/625724‑625684 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtggcTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAGGTCAGGGGCACTAAAGAAGTACTCGC  >  NC_002947/625723‑625860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.