New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	625684 =	45 (1.000)	3 (0.070)	3/234	NT	6.6%	intergenic (‑65/+28)	ppa/mtfA	inorganic pyrophosphatase/glucose‑regulated peptidase
	?	NC_002947	625723 =	42 (0.990)					coding (805/816 nt)	mtfA	glucose‑regulated peptidase

TGTCGTTCGGCAGGTCTTTGCCCGCCGGAATCTTGCTGTAGCTCATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAGGTCAGGGGCACTAAAGAAGTACTCGC  >  NC_002947/625574‑625860                                                                                                                                                      |                                                                                                                                          gcttcatcaggcttatccaaaggtctaccaccagttgtcgctgttctaccggcaagacccgctggcgcgcctgtgccggctgcaggcggaacaccccgagtaccgcgaaaGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCt                                                                                                                                           >  1:752314‑M1/111‑150 (MQ=255)  cttcatcaggcttatccaaaggtctaccaccagttgtcgctgttctaccggcaagacccgctggcgcgcctgtgccggctgcaggcggaacaccccgagtaccgcgaaaGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCtt                                                                                                                                          >  1:1166410‑M1/110‑150 (MQ=255)       tCGGCAGGTCTTTGCCCGCCGGAATCTTGCTGTAGCTCATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTcgcg                                                                                                                                     <  2:592903/150‑1 (MQ=255)                      ccgccgGAATCTTGCTGTAGCTCATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTc                                                                                                                      >  1:960403/1‑150 (MQ=255)                       cgccgGCATCTGGCGGTAGCTCATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGGCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTcc                                                                                                                     >  2:539294/1‑150 (MQ=255)                       cgccgGAATCTTGCTGTAGCCAATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGACTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCCTGGCTTTCGCGGTCCTCGGGGTGTTcc                                                                                                                     >  2:362220/1‑150 (MQ=255)                        gccgGAATCTTGCTGTAGCTCATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCg                                                                                                                    >  2:389371/1‑150 (MQ=255)                         ccgGAATCTTGCTGTAGCTCATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGtt                                                                                                                       <  1:349423/146‑1 (MQ=255)                         ccgGAATCTTGCTGTAGCTCATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGtt                                                                                                                       >  2:349423/1‑146 (MQ=255)                                   gCTGTAGCTCATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGcaag                                                                                                         <  1:645783/150‑4 (MQ=255)                                         gcacATTGGTCAGCGCCCCCGTGTTTGACCAAAAGTTGGCGGCGTTTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAgg                                                                                                   <  1:34395/147‑1 (MQ=255)                                         gCTCATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCgg                                                                                                                             <  2:1000069/124‑1 (MQ=255)                                         gCTCATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCgg                                                                                                                             >  1:1000069/1‑124 (MQ=255)                                         gCTCATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAgg                                                                                                   >  2:89137/1‑150 (MQ=255)                                             aTTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGgcgcg                                                                                               >  1:741701/1‑150 (MQ=255)                                                 ggCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAg                                                                                           >  2:234814/1‑150 (MQ=255)                                                        cccccGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCt                                                                                    >  1:775157/1‑150 (MQ=255)                                                          cccGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTc                                                                                     >  1:705087/1‑147 (MQ=255)                                                          cccGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTc                                                                                     <  2:705087/147‑1 (MQ=255)                                                          cccGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTg                                                                                  <  1:89137/150‑1 (MQ=255)                                                           ccGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGc                                                                                 <  1:860767/150‑1 (MQ=255)                                                            cGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGcc                                                                                <  1:1184784/150‑1 (MQ=255)                                                                      cAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGcc                                                                                                                  >  2:260172/1‑106 (MQ=255)                                                                      cAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGcc                                                                                                                  <  1:260172/106‑1 (MQ=255)                                                                      cAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCCTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAg                                                                      >  1:971284/1‑150 (MQ=255)                                                                       aaaaaGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGc                                                                     <  1:911079/150‑1 (MQ=255)                                                                                        ataGGCACATTCTGCCGGGCCACGCCACGCGTGGCCTGATGTGCGGGCCCGTTAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGTACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGAc                                                    >  1:943964/1‑150 (MQ=255)                                                                                            gCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCttt                                                >  1:710133/1‑150 (MQ=255)                                                                                              acaTTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGc                                                                                 >  1:615022/1‑115 (MQ=255)                                                                                              acaTTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGc                                                                                 <  2:615022/115‑1 (MQ=255)                                                                                              acaTTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTgg                                              >  1:752722/1‑150 (MQ=255)                                                                                                  tCTGCCGGGGTACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATaa                                          <  1:602274/150‑1 (MQ=255)                                                                                                    tGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGc                                        <  2:741701/150‑1 (MQ=255)                                                                                                     gCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGcc                                       <  1:389371/150‑1 (MQ=255)                                                                                                         gggCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCtgat                                   <  1:631704/150‑1 (MQ=255)                                                                                                             acgccacgcTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAg                               <  2:960403/150‑1 (MQ=255)                                                                                                             aagccacgcctgacgggcccgcacatcaggccaagcgtggcTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAg                               >  1:1166410‑M2/42‑150 (MQ=255)                                                                                                              agccacgcctgacgggcccgcacatcaggccaagcgtggcTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGc                              >  1:752314‑M2/41‑150 (MQ=255)                                                                                                                ccacgcctgacgggcccgcacatcaggccaagcgtggcTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAg                            <  2:1166410‑M2/112‑1 (MQ=255)                                                                                                                      ttGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTg                                               >  1:89488/1‑125 (MQ=255)                                                                                                                      ttGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTg                                               <  2:89488/125‑1 (MQ=255)                                                                                                                      ttGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGAGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAAACCTTTTGATAAGCCTGATGAAGAAGGTCAgg                      >  2:384071/1‑150 (MQ=255)                                                                                                                            tGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACtggtgg                                                         >  2:1056414/1‑109 (MQ=255)                                                                                                                            tGATGTGCCGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACtggtgg                                                         <  1:1056414/109‑1 (MQ=255)                                                                                                                                  gCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAGGTCAGGGGCACTAaagaa          <  1:539294/150‑1 (MQ=255)                                                                                                                                         cGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAGGTCAGGGGCACTAaagaa          >  1:82535/1‑143 (MQ=255)                                                                                                                                         cGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAGGTCAGGGGCACTAaagaa          <  2:82535/143‑1 (MQ=255)                                                                                                                                          gTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAGGTCAGGGGCACTAAAGAAGTACTCGc  >  2:6308/1‑150 (MQ=255)                                                                                                                                                    gcTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAGGTCAGGGGCACTAAAGAAGTACTCGc  >  2:321711‑M2/3‑140 (MQ=255)                                                                                                                                                    gcTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAGGTCAGGGGCACTAAAGAAGTACTCGc  <  1:321711‑M2/138‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                          TGTCGTTCGGCAGGTCTTTGCCCGCCGGAATCTTGCTGTAGCTCATTGGGCAGTGCCCCCGTGTTTGACCAAAAAGTGGCGGCGATTATAGGCACATTCTGCCGGGGCACGCCACGCTTGGCCTGATGTGCGGGCCCGTCAGGCGTGGCTTTCGCGGTACTCGGGGTGTTCCGCCTGCAGCCGGCACAGGCGCGCCAGCGGGTCTTGCCGGTAGAACAGCGACAACTGGTGGTAGACCTTTGGATAAGCCTGATGAAGCAGGTCAGGGGCACTAAAGAAGTACTCGC  >  NC_002947/625574‑625860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.