New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1265496 =	25 (0.550)	6 (0.140)	6/238	NT	16.4%	intergenic (‑71/+56)	PP_1106/quiP	hypothetical protein/acyl‑homoserine lactone acylase QuiP
	?	NC_002947	1265531 =	37 (0.850)					intergenic (‑106/+21)	PP_1106/quiP	hypothetical protein/acyl‑homoserine lactone acylase QuiP

CTGGTTCAAAGGGCGCTTCATGAGCCTGCCACTGCAACAGCAGAACTTCGGCAGGGCGTATGGCAACCAGCGGCTTACATTGGTGCCGGGGCGGTAACGGCATTCTTCAGGGGCGCATGAGGGGGCTTGATGAAGTTTTTCAGCAGCTCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1265648‑1265496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctcATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATGAAGCGCCCTTTGAACCAGGCATCCAACCCATCGCGGTAATGCGCGCTG  >  NC_002947/1265531‑1265678                                                                                                                                                                                                                                                                                                               CTGGTTCAAAGGGCGCTTCATGAGCCTGCCACTGCAACAGCAGAACTTCGGCAGGGCGTATGGCAACCAGCGGCTTACATTGGTGCCGGGGCGGTAACGGCATTCTTCAGGGGCGCATGAGGGGGCTTGATGAAGTTTTTCAGCAGCTCC                                                                                                                                                         >  1:1165560/1‑150                                                                                                          TTCAGGGGCGCATGAGGGGGCTTGATGAAGTTTTTCAGCAGCTCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCC                                                                                     <  1:501343/113‑1                                                                                                          TTCAGGGGCGCATGAGGGGGCTTGATGAAGTTTTTCAGCAGCTCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCC                                                                                     >  2:501343/1‑113                                                                                                                        AGGGGGCTTGATGAAGTTTTTCAGCAGCTCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATGAAGCGCCCTTTGAACC                                  >  2:656897/1‑150                                                                                                                            GGCTTGATGAAGTTTTTCAGCAGCTCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAA                                                                              <  1:1082128/102‑1                                                                                                                            GGCTTGATGAAGTTTTTCAGCAGCTCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAA                                                                              >  2:1082128/1‑102                                                                                                                                              AGCAGCTCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATGAAGCGCCCTTTGAACCAGGCATCCAACCCATCGCGGTA            <  1:656897/150‑1                                                                                                                                                        TCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATGAAGCGCCCTTTGAACCAGGCATCCAACCCATCGCGGTAATGCGCGCTG  <  2:547052/150‑1                                                                                                                                                                                                                                                                                                               CTGGTTCAAAGGGCGCTTCATGAGCCTGCCACTGCAACAGCAGAACTTCGGCAGGGCGTATGGCAACCAGCGGCTTACATTGGTGCCGGGGCGGTAACGGCATTCTTCAGGGGCGCATGAGGGGGCTTGATGAAGTTTTTCAGCAGCTCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1265648‑1265496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctcATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATGAAGCGCCCTTTGAACCAGGCATCCAACCCATCGCGGTAATGCGCGCTG  >  NC_002947/1265531‑1265678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.