| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1265496 = | 25 (0.550) | 6 (0.140) | 6/238 | NT | 16.4% | intergenic (‑71/+56) | PP_1106/quiP | hypothetical protein/acyl‑homoserine lactone acylase QuiP |
| ? | NC_002947 | 1265531 = | 37 (0.850) | intergenic (‑106/+21) | PP_1106/quiP | hypothetical protein/acyl‑homoserine lactone acylase QuiP | |||||
CACGGGCCGCCAGGGGTCGATGTAGAAATCTCCGGGCGGGCAGTACAGGCCTTCGGGGCGGGCGATGACGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATGAAGCGCCCTTTGAA > NC_002947/1265348‑1265644 | cagcgcgcattaccgcgatgggttggatgcctggttcaaagggcgcttcatgagcctgccactgcaacagcagaacttcggcagggcgtatggcaaccagcggcttacattggtgccggggcggtaacggcattcttcaggggcgcatGa < 2:547052‑M1/2‑1 (MQ=255) taccgcgatgggttggatgcctggttcaaagggcgcttcatgagcctgccactgcaacagcagaacttcggcagggcgtatggcaaccagcggcttacattggtgccggggcggtaacggcattcttcaggggcgcatGAGGGAgctgct < 1:656897‑M1/12‑1 (MQ=255) tAGAAATCTCCGGGCGGGCAGTACAGGCCTTCGGGGCGGGCGATGACGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTtcat > 1:1005266/1‑150 (MQ=255) ggttcaaagggcgcttcatgagcctgccactgcaacagcagaacttcggcagggcgtatggcaaccagcggcttacattggtgccggggcggtaacggcattcttcaggggcgcatGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCt > 2:656897‑M1/117‑150 (MQ=255) gggcgggcAGTACAGGCCTTCGGGGCGGGCGATGACGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTc < 1:535800/150‑1 (MQ=255) gTACAGGCCTTCGGGGCGGGCGATGACGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGAATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGcccc > 1:3771/1‑150 (MQ=255) aGGCCTTCGGGGCGGGCGATGACGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTgaa > 2:1060116/1‑150 (MQ=255) aGGCCTTCGGGGCGGGCGATGACGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTgaa < 1:35449/150‑1 (MQ=255) gCCTTCGGGGCGGGCGATGACGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACtt < 2:128459/121‑1 (MQ=255) gCCTTCGGGGCGGGCGATGACGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACtt > 1:128459/1‑121 (MQ=255) cTTCGGGGCGGGCGATGACGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAAt < 1:639385/150‑1 (MQ=255) gACGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCgg < 2:1005266/150‑1 (MQ=255) aCGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGCACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGc > 2:347679/1‑150 (MQ=255) cGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCNCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCa < 1:862119/150‑1 (MQ=255) gAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCAc < 1:1060116/150‑1 (MQ=255) ccATGGCACGGGCACTGGTTCTGGGGATTGCCTTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATg > 1:31002/1‑150 (MQ=255) cATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCAGGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGt > 1:116587/1‑150 (MQ=255) ttcggcagggcgtatggcaaccagcggcttacattggtgccggggcggtaacggcattcttcaggggcgcatGAGGGAGCTGCTGAAAA‑ACTTCATCAAGcc < 1:1082128‑M1/30‑1 (MQ=255) ttcggcagggcgtatggcaaccagcggcttacattggtgccggggcggtaacggcattcttcaggggcgcatGAGGGAGCTGCTGAAAA‑ACTTCATCAAGcc > 2:1082128‑M1/73‑102 (MQ=255) gggcgtatggcaaccagcggcttacattggtgccggggcggtaacggcattcttcaggggcgcatGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTgaa < 1:501343‑M1/48‑1 (MQ=255) gggcgtatggcaaccagcggcttacattggtgccggggcggtaacggcattcttcaggggcgcatGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTgaa > 2:501343‑M1/66‑113 (MQ=255) cgatctgTTTTGGTGTTACCCGTTAAGAGGCAGGATGCTGGACGTTAGTTGGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAACAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTgg < 2:460512/144‑1 (MQ=255) aCTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGtt > 2:474977/1‑150 (MQ=255) ttCTGGGGTTACCCGTTAAGAGGCATGGTCCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGGAAA‑ACTTCATCACGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCCCCCCGGCACCAATGTAAGCCGCTGGtagatgg > 1:460512/1‑144 (MQ=255) tGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAACATCTGATTCAG‑CTCCGCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTgg < 2:31002/150‑1 (MQ=255) gACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCa > 2:863122/1‑150 (MQ=255) gACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCa > 1:1170644/1‑150 (MQ=255) gTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGc < 2:1170644/150‑1 (MQ=255) gTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGc > 1:56423/1‑150 (MQ=255) ttAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCt > 1:318452/1‑150 (MQ=255) ttCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATg > 1:1068638/1‑150 (MQ=255) gatggatTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATGatcc < 1:347679/150‑4 (MQ=255) ggagggagCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGc > 2:246987/1‑82 (MQ=255) ggagggagCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGc < 1:246987/82‑1 (MQ=255) ggagggagCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCa > 2:516387/1‑128 (MQ=255) ggagggagCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCa < 1:516387/128‑1 (MQ=255) ggagggagCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATGAAGCGCCCTTTGaa > 2:1114176/1‑150 (MQ=255) | CACGGGCCGCCAGGGGTCGATGTAGAAATCTCCGGGCGGGCAGTACAGGCCTTCGGGGCGGGCGATGACGAGGTCCATGGCACGGGCACTGGTTCTGGGGTTACCCGTTAAGAGGCATGGTGCTGGACGTTAGTTCGGATGGATTTGGGAGGGAGCTGCTGAAAA‑ACTTCATCAAGCCCCCTCATGCGCCCCTGAAGAATGCCGTTACCGCCCCGGCACCAATGTAAGCCGCTGGTTGCCATACGCCCTGCCGAAGTTCTGCTGTTGCAGTGGCAGGCTCATGAAGCGCCCTTTGAA > NC_002947/1265348‑1265644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |