| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1460806 = | 58 (1.290) | 6 (0.140) | 6/238 | NT | 9.0% | coding (666/1167 nt) | algJ | alginate O‑acetylase AlgJ |
| ? | NC_002947 | 1460877 = | 66 (1.520) | coding (595/1167 nt) | algJ | alginate O‑acetylase AlgJ | |||||
CGCACCGGACCTGATGGCACCGATGGAGCAGGCCAAGGCCCGCGGCCAGGTATTCCTGCGTACCGATACCCACTGGACGCCTATGGGTGCCGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1460959‑1460806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccaTAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAACACGTTGGCCTGGCGTGCCTGGGCATGGAACTGGTTGTACAGGTCGTCATGCAGGCTGGCAG > NC_002947/1460877‑1461023 CGCACCGGACCTGATGGCACCGATGGAGCAGGCCAAGGCCCGCGGCCAGGTATTCCTGCGTACCGATACCCACTGGACGCCTATGGGTGCCGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGA < 2:524606/150‑1 ACCGGACCTGATGGCACCGATGGAGCAGGCCAAGGCCCGCGGCCAGGTATTCCTGCGTACCGATACCCACTGGACGCCTATGGGTGCCGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCC > 2:117906/1‑150 CCTATGGGTGCCGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGT > 1:268210/1‑150 CTATGGGTGCCGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTC > 1:250376/1‑150 GGGTGCCGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGT < 2:250376/150‑1 CGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCGCCACTTCGGC‑ACCCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAAC > 1:439268/1‑149 CGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCGCCACTTCGGC‑ACCCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAAC < 2:439268/149‑1 TGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAACACGTTGGCCTGGCGTGCCTG < 2:268210/150‑1 CCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAACACGTTGGCCTGGCGTGCCTGGGCATGGAACTGGTTGTACAGGTCGTCATGCAGGCTGGCAG > 2:207616/1‑150 ATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAACACGTTGG < 1:183436/94‑1 ATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAACACGTTGG > 2:183436/1‑94 CGCACCGGACCTGATGGCACCGATGGAGCAGGCCAAGGCCCGCGGCCAGGTATTCCTGCGTACCGATACCCACTGGACGCCTATGGGTGCCGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1460959‑1460806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccaTAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAACACGTTGGCCTGGCGTGCCTGGGCATGGAACTGGTTGTACAGGTCGTCATGCAGGCTGGCAG > NC_002947/1460877‑1461023 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |