New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2131568	51 (1.130)	5 (0.120)	5/236	NT	9.6%	coding (674/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	= 2131577	46 (1.070)					coding (665/2496 nt)	fimD	type I pili subunit FimD

CCATGTCCGAGGCCACGCGCACGCCTGATATCGGCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2131416‑2131568 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggc‑GCCAGGGCAGCCAGGGCAAGACTGAATGGACCCGGGCACAGACCTACGCACAGCGCGATATACCGGGTACCCTCGCCAATCTGACGATTGGCGAAACCTTCACGGACAGGGAGGTGTTCCGTTCGGTGCCGATATC  <  NC_002947/2131577‑2131442                                                                                                                                                                                                                                                                                                    CCATGTCCGAGGCCACGCGCACGCCTGATATCGGCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCT                                                                                                                                              >  1:310040/1‑150                                 GGCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCT                                                                                                                                              >  1:215077/1‑118                                 GGCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCT                                                                                                                                              <  2:215077/118‑1                                                                                                  CGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGC‑GCCAGGGCAGCCAGG                                                                                                                           >  1:430924/1‑71                                                                                                  CGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGC‑GCCAGGGCAGCCAGG                                                                                                                           <  2:430924/71‑1                                                                                                                                         TTCAGTCTTGCCCTGGCTGCCCTGGC‑GCCAGGGCAAGACTGAATGGACCCGGGCACAGACCTACGCACAGCGCGATATACCGGGTACCCTCGCCAATCTGACGATTGGC                                              <  1:138294/109‑1                                                                                                                                         TTCAGTCTTGCCCTGGCTGCCCTGGC‑GCCAGGGCAAGACTGAATGGACCCGGGCACAGACCTACGCACAGCGCGATATACCGGGTACCCTCGCCAATCTGACGATTGGC                                              >  2:138294/1‑109                                                                                                                                            AGTCTTGCCCTGGCTGCCCTGGC‑GCCAGGGCAAGACTGAATGGACCCGGGCACAGACCTACGCACAGCGCGATATACCGGGTACCCTCGCCAATCTGACGATTGGCGAAACCTTCACGGACAGGGAGGTGTTCCGTTCGGTGCCGATATC  >  2:846346/1‑150                                                                                                                                                                                                                                                                                                    CCATGTCCGAGGCCACGCGCACGCCTGATATCGGCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2131416‑2131568 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggc‑GCCAGGGCAGCCAGGGCAAGACTGAATGGACCCGGGCACAGACCTACGCACAGCGCGATATACCGGGTACCCTCGCCAATCTGACGATTGGCGAAACCTTCACGGACAGGGAGGTGTTCCGTTCGGTGCCGATATC  <  NC_002947/2131577‑2131442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.