New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2131568	51 (1.130)	5 (0.120)	5/236	NT	9.6%	coding (674/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	= 2131577	46 (1.070)					coding (665/2496 nt)	fimD	type I pili subunit FimD

CCACGCGCACGCCTGATATCGGCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGTTGCGGCCGTTCAGGGTGGAGGCCTGATAGTTGATGAAAGCGGCATTGATA  >  NC_002947/2131428‑2131720                                                                                                                                                      |                                                                                                                                                ccACGCGCACGCCTGATATCGGCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTtgccctggctgccctggc                                                                                                                                                 >  2:411270/1‑150 (MQ=255)            ccTGATATCGGCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTgg                                                                                                                                      <  1:349754/150‑1 (MQ=255)            ccTGATATCGGCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTgg                                                                                                                                      <  1:218276/150‑1 (MQ=255)             cTGATATCGGCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTggg                                                                                                                                     <  1:433184/150‑1 (MQ=255)               gATATCGGCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGC‑GCCAGGGCagccagggcaagact                                                                                                                                  >  2:846346‑M2/1‑135 (MQ=255)                atatCGGCACCGAACGGAACACCTCCCTGTCCGTTAAGATTTCGCCAATGGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGGCTGTGCCCGGGTAACTGCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTAc                                                                                                                                  >  1:557925/1‑150 (MQ=255)                 tatCGGCACCGAACGGAACACCTCCCTGTCCGCGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACt                                                                                                                                 <  1:1088471/150‑1 (MQ=255)                     ggCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTgcgc                                                                                                                             <  2:311210/150‑1 (MQ=255)                          cGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGgcg                                                                                                                        >  1:1142647/1‑150 (MQ=255)                           gAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGgcgc                                                                                                                       >  1:561118/1‑150 (MQ=255)                               ggAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCAtt                                                                                                                   >  1:1112405/1‑150 (MQ=255)                                      cTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAg                                                                                                            >  2:785365/1‑150 (MQ=255)                                       tCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAgg                                                                                                           <  1:785365/150‑1 (MQ=255)                                         ccTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGtt                                                                                                         >  1:670058/1‑150 (MQ=255)                                            gTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCGGGCGCCATTCGCCCAGGTTGAt                                                                                                      >  1:771909/1‑150 (MQ=255)                                                gTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCa                                                                                                  >  1:306794/1‑150 (MQ=255)                                                 tGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGa                                                                                                       <  2:689017/144‑1 (MQ=255)                                                 tGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGa                                                                                                       >  1:689017/1‑144 (MQ=255)                                                  gAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCACGGGTCAATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGAACTGGGTACTGCGCAGGCTCAAGTCGCCCGCGTTGATACCACt                                                                                                >  2:279484/1‑150 (MQ=255)                                                           gCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTc                                                                                                                  <  1:326362/123‑1 (MQ=255)                                                           gCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTc                                                                                                                  >  2:326362/1‑123 (MQ=255)                                                           gCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGC‑GCCAGGGCagccagggcaagactgaa                                                                                                                               <  1:138294‑M2/109‑19 (MQ=255)                                                           gCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGC‑GCCAGGGCagccagggcaagactgaa                                                                                                                               >  2:138294‑M2/1‑91 (MQ=255)                                                            ccAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCTGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTAc                                                                                      >  1:1157443/1‑150 (MQ=255)                                                              aaTCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAg                                                                                    <  2:708988/150‑1 (MQ=255)                                                                  gttagggtGGCGAGGGTCCCCGGTATATCGAGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCCGTCTTGCCCTGGCTGCCCTGGCGCCTGTTCTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCg                                                                                <  2:1157443/143‑1 (MQ=255)                                                                   tCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGt                                                                               <  2:670058/150‑1 (MQ=255)                                                                      gATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCGGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGc                                                                            <  2:771909/150‑1 (MQ=255)                                                                      gATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATa                                                                                                     <  2:818421/125‑1 (MQ=255)                                                                      gATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATa                                                                                                     >  1:818421/1‑125 (MQ=255)                                                                      gATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACAACTGTTCAGGTACAGGTCGTTGc                                                                            >  1:250917/1‑150 (MQ=255)                                                                                    cccGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCGCTGGCTGCCCTGGCGCCAGGAGTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTAAGGTCCAGGTCGTTGCTGGTGTAACGGcaa                                                              >  1:250199/1‑148 (MQ=255)                                                                                    cccGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCa                                                              >  2:692322/1‑150 (MQ=255)                                                                                     ccGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTc                                                                                            <  2:1010104/119‑1 (MQ=255)                                                                                     ccGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTc                                                                                            >  1:1010104/1‑119 (MQ=255)                                                                                     ccGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCag                                                             >  1:746214/1‑150 (MQ=255)                                                                                     ccGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATGCGACGAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCag                                                             >  2:939062/1‑150 (MQ=255)                                                                                       ggTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCagag                                                           <  2:746214/150‑1 (MQ=255)                                                                                                   tgtgCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGttatgc                                               <  2:708816/150‑5 (MQ=255)                                                                                                    gtgCGTAGGTCTGTGCACGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCTGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCCTTTATAGGTCGTTGCTGGTGTAACGGCAAGAGGAGCGGTTGCGGc                                              <  1:279484/150‑1 (MQ=255)                                                                                                           ggTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGCTGGGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGTTGCGGCCGTTCAg                                       <  1:318329/150‑1 (MQ=255)                                                                                                             tCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTg                                                                          >  2:400637/1‑113 (MQ=255)                                                                                                             tCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTg                                                                          <  1:400637/113‑1 (MQ=255)                                                                                                               tgtgCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGTTGCGGCCGTTCAGGGTg                                   >  2:1155512/1‑150 (MQ=255)                                                                                                                    ccGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGTTGCGGCCGTTCAGGGTGGAGGc                              >  1:958226/1‑150 (MQ=255)                                                                                                                               cAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGTTGCGGCCGTTCAGGGTGGAGGCCTGATAGTtga                   <  1:411270/150‑1 (MQ=255)                                                                                                                               cAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGTTGCGGCCGTTCAGGGTGGAGGCCTGATAGTtga                   <  2:81397/150‑1 (MQ=255)                                                                                                                               cAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGTTGCGGCCGTTCAGGGTGGAGGCCTGATAGTtga                   <  2:958226/150‑1 (MQ=255)                                                                                                                                    ttGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGTTGCGGCCGTTCAGGGTGGAGGCCTGATAGTTGATGaaa              <  2:1142647/150‑1 (MQ=255)                                                                                                                                       ccctggctgccctggcGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGTTGCGGCCGTTCAGGGTGGAGGCCTGATAGTTGATGAAAGCg           <  2:561118/150‑1 (MQ=255)                                                                                                                                        cctggctgccctggcgccagggcaagactgaatggacccgggcacagacctacgcacagcgcgatataccg                                                                                         >  1:430924‑M2/1‑15 (MQ=255)                                                                                                                                        cctggctgccctggcgccagggcaagactgaatggacccgggcacagacctacgcacagcgcgatataccg                                                                                         <  2:430924‑M2/71‑57 (MQ=255)                                                                                                                                             ctgccctggcGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGTTGCGGCCGTTCAGGGTGGAGGCCTGATAGTTGATGAAAGCGGCATTg     >  2:1145781/1‑150 (MQ=255)                                                                                                                                                ccctggcGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGTTGCGGCCGTTCAGGGTGGAGGCCTGATAGTTGATGAAAGCGGCATTGATa  <  2:306794/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                CCACGCGCACGCCTGATATCGGCACCGAACGGAACACCTCCCTGTCCGTGAAGGTTTCGCCAATCGTCAGATTGGCGAGGGTACCCGGTATATCGCGCTGTGCGTAGGTCTGTGCCCGGGTCCATTCAGTCTTGCCCTGGCTGCCCTGGCGCCAGGACTGGGTACTGCGCAGGCGCCATTCGCCCAGGTTGATACCACTGTTCAGGTACAGGTCGTTGCTGGTGTAACGGCCAGAGGAGCGGTTGCGGCCGTTCAGGGTGGAGGCCTGATAGTTGATGAAAGCGGCATTGATA  >  NC_002947/2131428‑2131720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.