New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 214727027 (0.600)4 (0.100)
+TTGGTTTGCCTGACGGGCC		 3/210 NT 11.5% intergenic (+100/+17) murB/rne UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
?NC_002947 = 5879216 46 (1.020)intergenic (‑164/+19) PP_5152/ycgM hypothetical protein/isomerase/hydrolase

GGTTTGGGGTTGAGCTGGAGATGGAGCCTAATCTTTACTGATTTGCCGGCTGTGAACCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGTCAGGCAAACCAAAAAAAGCCCCGCCAGTTTGCACTGGCGGGGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2147130‑2147270
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCTTCGCGGGTAAACCCGCTCCTACAGGGGTTGCA  <  NC_002947/5879216‑5879182
                                                                                                                                             |||||||||||||||||||                                   
GGTTTGGGGTTGAGCTGGAGATGGAGCCTAATCTTTACTGATTTGCCGGCTGTGAACCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGTCAGGCAAACCAAAAAAAGCCCCGCCAGTGCAAACTGGCGGGGCTTTTTTTGGTTTGC                                               <  1:514509/150‑1
                                                                                                              GCCCCGCCAGTTTGCACTGGCGGGGCTTTTTTTGGTTTGCCTGACGGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGTTcac  <  1:460161/85‑4
                                                                                                              GCCCCGCCAGTTTGCACTGGCGGGGCTTTTTTTGGTTTGCCTGACGGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGTTcac  >  2:460161/1‑82
                                                                                                               CCCCGCCAGTTTGCACTGGCGGGGCTTTTTTTGGTTTGCCTGACGGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGG       >  1:164650/1‑79
                                                                                                               CCCCGCCAGTTTGCACTGGCGGGGCTTTTTTTGGTTTGCCTGACGGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGG       <  2:164650/79‑1
                                                                                                                                             |||||||||||||||||||                                   
GGTTTGGGGTTGAGCTGGAGATGGAGCCTAATCTTTACTGATTTGCCGGCTGTGAACCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGTCAGGCAAACCAAAAAAAGCCCCGCCAGTTTGCACTGGCGGGGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2147130‑2147270
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCTTCGCGGGTAAACCCGCTCCTACAGGGGTTGCA  <  NC_002947/5879216‑5879182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.