New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2147270	27 (0.600)	4 (0.100) +TTGGTTTGCCTGACGGGCC	3/210	NT	11.5%	intergenic (+100/+17)	murB/rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
	?	NC_002947	= 5879216	46 (1.020)					intergenic (‑164/+19)	PP_5152/ycgM	hypothetical protein/isomerase/hydrolase

AATGGGCGTAGGTGCGCGCATTATCCGGATTGGGTGTGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTACCGGTGAGGATCACATCCCCCGCTTGTAGCGAGA  >  NC_002947/5879069‑5879359                                                                                                                                                    |                                                                                                                                                aaTGGGCGTAGGTGCGCGCATTATCCGGATTGGGTGTGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGaaa                                                                                                                                               >  1:637241/1‑150 (MQ=255)  aTGGGCGTAGGTGCGCGCATTATCCGGATTGGGTGCGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAg                                                                                                                                              <  2:117016/150‑1 (MQ=255)        gTAGGTGCGCGCATTATCCGGATTGGGTGTGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGAcgc                                                                                                                                        <  1:956108/150‑1 (MQ=255)        gTAGGTGCGCGCATCAGCCGCATTCAGGGCGAAAAAGTCATAAATGGGGCCGACCCTTTCGCCGGTAAGCCCCAGCTCAACGTACTGCACAATATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTGCCCCCGAAGAAAGCGAcac                                                                                                                                        <  2:368466/150‑3 (MQ=255)                gcgcATTATCCGGATTGGGTGGGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGTACAGTATTCAAGGCCCTGTGCAACGCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGa                                                                                                                                <  1:161491/150‑1 (MQ=255)                 cgcATTATCCGGATTGGGTGTGAAAGATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTACACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAg                                                                                                                               >  1:1064085/1‑150 (MQ=255)                      tATCCGGATTGGGTGTGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGAcgc                                                                                                                                        >  2:558123/1‑136 (MQ=255)                      tATCCGGATTGGGTGTGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGAcgc                                                                                                                                        <  1:558123/136‑1 (MQ=255)                      tATCCGGATTGGGTGTGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCaaa                                                                                                                          <  1:763454/150‑1 (MQ=255)                       ttCCGGTTTGGGTGTGCAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAAGCCCTGTGCAACCCCTGTAGGAGCGGGTTTGCCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAg                                                                                                                         <  2:157067/149‑1 (MQ=255)                           ggATTGGGTGTGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGAcgc                                                                                                                                        <  2:58630/131‑1 (MQ=255)                           ggATTGGGTGTGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGAcgc                                                                                                                                        >  1:58630/1‑131 (MQ=255)                              ttGGGTGTGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCgg                                                                                                                  <  1:1069698/150‑1 (MQ=255)                                gggTGTGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCgaaga                                                                                                                                                 >  2:258747/1‑117 (MQ=255)                                gggTGTGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCgaaga                                                                                                                                                 <  1:258747/117‑1 (MQ=255)                                       aaaaaTCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAg                                                                                                         >  2:925991/1‑150 (MQ=255)                                       aaaaaTCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAg                                                                                                         >  2:904648/1‑150 (MQ=255)                                       aaaaaTCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAg                                                                                                         >  2:925925/1‑150 (MQ=255)                                             cGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTc                                                                                                   <  1:925925/150‑1 (MQ=255)                                             cGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTc                                                                                                   <  1:925991/150‑1 (MQ=255)                                                    cAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCAAAGGTACGGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCg                                                                                            >  1:834549/1‑150 (MQ=255)                                                     aGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCgg                                                                                           <  2:59252/150‑1 (MQ=255)                                                      gggCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGc                                                                                          >  2:1192565/1‑150 (MQ=255)                                                       ggccggccTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCa                                                                                         >  2:649486/1‑150 (MQ=255)                                                                    gCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAg                                                                            <  2:283539/150‑1 (MQ=255)                                                                     ccGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGc                                                                           <  1:944523/150‑1 (MQ=255)                                                                            aCCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCAc                                                                    >  1:1190705/1‑150 (MQ=255)                                                                             cccGTGCGCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGTGTCAAAGCACCCGGCGTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGtgccc                                                                   >  2:553303/1‑146 (MQ=255)                                                                                            cTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAg                                                                                        <  1:707184/114‑1 (MQ=255)                                                                                            cTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAg                                                                                        >  2:707184/1‑114 (MQ=255)                                                                                                    tATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACgccgg                                            >  2:978904/1‑150 (MQ=255)                                                                                                        cAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAg                                                                                                                         >  2:912477/1‑69 (MQ=255)                                                                                                        cAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAg                                                                                                                         <  1:912477/69‑1 (MQ=255)                                                                                                              ccTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTAcc                                  >  2:1166478/1‑150 (MQ=255)                                                                                                                tgtgCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGc                                                      >  1:40426/1‑128 (MQ=255)                                                                                                                tgtgCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGc                                                      <  2:40426/128‑1 (MQ=255)                                                                                                                  gtgaacccCCGTAGGAGCGGGTTTACCCGCGAAGAggcccgtcaggcaaaccaaaaaaagccccgccagtgcaaactggcggggc                                                                                               <  1:460161‑M2/82‑51 (MQ=255)                                                                                                                  gtgaacccCCGTAGGAGCGGGTTTACCCGCGAAGAggcccgtcaggcaaaccaaaaaaagccccgccagtgcaaactggcggggc                                                                                               >  2:460161‑M2/4‑35 (MQ=255)                                                                                                                   gCAACCGCGGTCGGCGCGAGTTTACCCGCGAAGAAAGCGACTCCGCTTCGAGACAAAGCCCCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCGCCGACATTGAACGGCCCGACGCCGGCCGGGGTACCGGTGa                             <  2:1049042/150‑1 (MQ=255)                                                                                                                   gCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTACCGGTGa                             <  2:637241/150‑1 (MQ=255)                                                                                                                    cAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTACCg                                 <  2:1106473/145‑1 (MQ=255)                                                                                                                    cAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTACCg                                 >  1:1106473/1‑145 (MQ=255)                                                                                                                    cAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTACCGGTGAg                            <  1:649486/150‑1 (MQ=255)                                                                                                                     aaCCCCTGTAGGAGCGAGCTTACCCGCGAAGAAAGCGACCCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCCCCTCACCGACATTAAACGGCCCGACTCCGGCCGGCGTCCCGGTGAgg                           >  2:601386/1‑150 (MQ=255)                                                                                                                      aCCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTACCGGTGAGGa                          <  1:1166478/150‑1 (MQ=255)                                                                                                                       ccccCGTAGGAGCGGGTTTACCCGCGAAGAggcccgtcaggcaaaccaaaaaaagccccgccagtgcaaactggcgggg                                                                                                >  1:164650‑M2/1‑30 (MQ=255)                                                                                                                       ccccCGTAGGAGCGGGTTTACCCGCGAAGAggcccgtcaggcaaaccaaaaaaagccccgccagtgcaaactggcgggg                                                                                                <  2:164650‑M2/79‑50 (MQ=255)                                                                                                                             tAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTc                                                                         <  1:881700/96‑1 (MQ=255)                                                                                                                             tAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTc                                                                         >  2:881700/1‑96 (MQ=255)                                                                                                                              aGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTACCGGTGAGGATCACATcc                  <  1:371231/150‑1 (MQ=255)                                                                                                                                  gCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTACCGGTGAGGATCACATCCCCCg              >  2:932594/1‑150 (MQ=255)                                                                                                                                        ttACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTACCGGTGAGGATCACATCCCCCGCTTGTa        <  2:1064085/150‑1 (MQ=255)                                                                                                                                        ttACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTACCGGTGAGGATCACATCCCCCGCTTGTa        <  2:1190705/150‑1 (MQ=255)                                                                                                                                              gcgAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTACCGGTGAGGATCACATCCCCCGCTTGTAGCgaga  >  1:1107448/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                AATGGGCGTAGGTGCGCGCATTATCCGGATTGGGTGTGAAAAATCGGTAAACAGGGCCGGCCTCTTCGCCGGTAAACCCGTGCCCAAGGTACTGCACAGTATTCAAGGCCCTGTGCAACCCCTGTAGGAGCGGGTTTACCCGCGAAGAAAGCGACGCGGTTTCGAGTCAAAGCACCCGGCTTTCGAAGCGGCTCACACCCGGCAGCTCCAGCACCAGCTCGTCACCGACATTGAACGGCCCGACGCCGGCCGGGGTACCGGTGAGGATCACATCCCCCGCTTGTAGCGAGA  >  NC_002947/5879069‑5879359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.