New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2291582 | 54 (1.200) | 3 (0.070) | 3/232 | NT | 6.6% | coding (890/960 nt) | PP_2018 | BNR domain‑containing protein |
? | NC_002947 | = 2291651 | 34 (0.810) | coding (959/960 nt) coding (3/2400 nt) |
PP_2018 PP_2019 |
BNR domain‑containing protein RND family multidrug transporter |
ACGCTTGTCGATGATGGCACCCTGGTGCTGGTCGGCAATGGTGGCAGCGTGCTGCGCAGCACGGACGACGGCCAGACCTTCAGCGTGTACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2291428‑2291582 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctggtCATGGGCGCACCTCCGGGGCAGGCTGATCAGCCCCTTCGGCGCTGGCCAGGTGCACACCACCCTGCCCCAC < NC_002947/2291651‑2291581 ACGCTTGTCGATGATGGCACCCTGGTGCTGGTCGGCAATGGTGGCAGCGTGCTGCGCAGCACGGACGACGGCCAGACCTTCAGCGTGTACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTG < 2:899033/150‑1 CTTGTCGATGATGGCACCCTGGTGCTGGTCGGCAATGGTGGCAGCGTGCTGCGCAGCACGGACGACGGCCAGACCTTCAGCGTGTACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTG < 2:1019312/150‑1 CTTGTCGATGATGGCACCCTGGTGCTGGTCGGCAATGGTGGCAGCGTGCTGCGCAGCACGGACGACGGCCAGACCTTCAGCGTGTACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCATGGCCAACGGCGGCCTGCTGCTG > 2:266616/1‑150 TTGTCGATGATGGCACCCTGGTGCTGGTCGGCAATGGTGGCAGCGTGCTGCGCAGCACGGACGACGGCCAGACCTTCAGCGTGTACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGG > 2:1110861/1‑150 TTGTCGATGATGGCACCCTGGTGCGGGTCGGCAATGGTGGCAGCGTGCTGCGCAGCACGGACGACGGCCAGACCTTCAGCGTGTACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGG > 2:345230/1‑150 CAGACCTTCAGCGTGTACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTCATGGGCGCACCTCCGGGGCAGGCTGATCAGCCCCTTCGGCGCTGGCCAGGTGCACACCACCCTGCC < 1:345230/150‑1 CCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTCATGGGCGCACCTCCGGGGCAGGCTGATCAGCCCCTTCGGCGCTGGCCAGGTGCACACCACCCTGCCCCAC > 1:54941/1‑111 CCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTCATGGGCGCACCTCCGGGGCAGGCTGATCAGCCCCTTCGGCGCTGGCCAGGTGCACACCACCCTGCCCCAC < 2:54941/111‑1 ACGCTTGTCGATGATGGCACCCTGGTGCTGGTCGGCAATGGTGGCAGCGTGCTGCGCAGCACGGACGACGGCCAGACCTTCAGCGTGTACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2291428‑2291582 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctggtCATGGGCGCACCTCCGGGGCAGGCTGATCAGCCCCTTCGGCGCTGGCCAGGTGCACACCACCCTGCCCCAC < NC_002947/2291651‑2291581 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |