| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2291582 | 54 (1.200) | 3 (0.070) | 3/232 | NT | 6.6% | coding (890/960 nt) | PP_2018 | BNR domain‑containing protein |
| ? | NC_002947 | = 2291651 | 34 (0.810) | coding (959/960 nt) coding (3/2400 nt) |
PP_2018 PP_2019 |
BNR domain‑containing protein RND family multidrug transporter |
|||||
CGTGTACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCATCGCCCTGTGCGTGCTGGTCAGCATTTTCCTGTTCTGGCAGGCCACGCAGATTC > NC_002947/2291511‑2291796 | cGTGTACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAgg > 2:1190762/1‑150 (MQ=255)cGTGTACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAgg > 1:610839/1‑150 (MQ=255) tACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGgaga > 2:283256/1‑150 (MQ=255) tACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGgaga < 1:283256/150‑1 (MQ=255) cAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGc < 1:149397/150‑1 (MQ=255) cgcgCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTa < 1:1190762/150‑1 (MQ=255) cgcCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGGGCATTAcc < 2:642071/150‑1 (MQ=255) cgcCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTAcc < 2:687981/150‑1 (MQ=255) ccGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCAt < 1:1073617/150‑1 (MQ=255) ctggccctggccGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAgg < 1:992289/128‑1 (MQ=255) ctggccctggccGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAgg > 2:992289/1‑128 (MQ=255) ccGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGa < 1:178555/150‑1 (MQ=255) aGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCa < 1:1044151/150‑1 (MQ=255) gTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCAc > 2:178167/1‑150 (MQ=255) gccAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCg > 1:475753/1‑150 (MQ=255) aCGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATaaa < 1:1147021/133‑1 (MQ=255) aCGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATaaa > 2:1147021/1‑133 (MQ=255) cggcggCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCATCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGc > 2:1002600/1‑150 (MQ=255) cggcggCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCATCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGc < 1:1002600/150‑1 (MQ=255) ggcggcCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGgag > 2:1120282/1‑98 (MQ=255) ggcggcCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGgag < 1:1120282/98‑1 (MQ=255) tgctgctgGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGAt > 2:75635/1‑147 (MQ=255) tgctgctgGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGAt < 1:75635/147‑1 (MQ=255) tggtggGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTcaacaa < 2:475753/150‑1 (MQ=255) gtggGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGaccagcagcaggccgccgttggccaggccactgacgccgg < 2:54941‑M2/111‑41 (MQ=255) gtggGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGaccagcagcaggccgccgttggccaggccactgacgccgg > 1:54941‑M2/1‑71 (MQ=255) gtggGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAAcc < 2:106363/150‑1 (MQ=255) ggggCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGc < 2:305744/150‑1 (MQ=255) ggCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGaccagcagcaggccgccgttggccaggccactgacgccggccagggccaggcggtcggcgcggttgtacacgctgaaggtctg < 1:345230‑M2/150‑84 (MQ=255) gCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAAcc > 2:340955/1‑145 (MQ=255) gCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAAcc < 1:340955/145‑1 (MQ=255) gggTGGTGTGCACCTGGCCAGCGCCGAATGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTg < 1:266616/150‑1 (MQ=255) gtgtGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCAt < 1:178167/150‑1 (MQ=255) tgtgCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCATc < 1:1185864/150‑1 (MQ=255) tgCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTcaa > 2:1108001/1‑129 (MQ=255) tgCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTcaa < 1:1108001/129‑1 (MQ=255) aCCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCATCGCCCt > 2:1052367/1‑150 (MQ=255) tGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCAt < 2:881062/72‑1 (MQ=255) tGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCAt > 1:881062/1‑72 (MQ=255) ctgcgcCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCGATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCATCGCCCTgtgcgtg > 2:772369/3‑150 (MQ=255) tGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCATCGCCCTGTGCGTGCTGGTCAGCATTTTCCTGTTCTgg > 2:338678/1‑150 (MQ=255) ccccGGAGGTGCGCCCATGACCAGCATGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCATCGCCCTGTGCGTGCTGGTCAGCATTTTCCTGTTCTGGCa < 1:495925/150‑1 (MQ=255) cccGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCATCGCCCTGTGCGTGCTGGTCAGCATTTTCCTGTTCTGGCAg < 1:715119/150‑1 (MQ=255) cccGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCACCCAGTGGTCATCGCCCTGTGCGTGCTGGTCAGCATTTTCCTGTTCTGGCAg > 2:663399/1‑150 (MQ=255) cGGAGGTGCGACCATGACCAGCAGGGAGAGCATTACCATGCTCCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCATCGCCCTGTGCGTGCTGGTCAGCATTTTCCTGTTCTGGCAGGc < 2:142354/150‑1 (MQ=255) ccATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAg > 1:148357/1‑90 (MQ=255) ccATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAg < 2:148357/90‑1 (MQ=255) ccATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCATCGCCCTGTGCGTGCTGGTCAGCATTTTCCTGTTCTGGCAGGCCACGCAGATTc > 1:563981/1‑150 (MQ=255) aTGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCATCGCCCTGTGCGTGCTGGTCAGCATTTTCCTGTTCt > 2:366812/1‑130 (MQ=255) aTGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCATCGCCCTGTGCGTGCTGGTCAGCATTTTCCTGTTCt < 1:366812/130‑1 (MQ=255) | CGTGTACAACCGCGCCGACCGCCTGGCCCTGGCCGGCGTCAGTGGCCTGGCCAACGGCGGCCTGCTGCTGGTGGGGCAGGGTGGTGTGCACCTGGCCAGCGCCGAAGGGGCTGATCAGCCTGCCCCGGAGGTGCGCCCATGACCAGCAGGGAGAGCATTACCATGCACCCGCATCACCAGGATAAAGCCACGCTGCTCGAACGCCTGATCTTCAACAACCGCCCAGTGGTCATCGCCCTGTGCGTGCTGGTCAGCATTTTCCTGTTCTGGCAGGCCACGCAGATTC > NC_002947/2291511‑2291796 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |