| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3501501 | 29 (0.640) | 22 (0.500) | 22/240 | NT | 36.6% | coding (192/192 nt) | PP_5567 | hypothetical protein |
| ? | NC_002947 | = 5062465 | 48 (1.100) | coding (1094/1098 nt) | PP_4459 | transposase | |||||
CAAGTTTCACAACCTGGCCAACCCCGAGCAGGAGCTGCTGCTGGAAACCTTCAAGGGCACCGAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3501363‑3501501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctagTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTTGTGCAGCGCTAAAAACGTGGTAAT < NC_002947/5062465‑5062320 CAAGTTTCACAACCTGGCCAACCCCGAGCAGGAGCTGCTGCTGGAAACCTTCAAGGGCACCGAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCTGCTCATGATGGGCTAGTGTCCTGTCTC < 2:747093/150‑1 AAGTTTCACAACCTGGCCAACCCCGAGCAGGAGCTGCTGCTGGAAACCTTCAAGGGCACCGAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCA > 2:232313/1‑150 TTTCACAACCTGGCCAACCCCGAGCAGGAGCTGCTGCTGGAAACCTTCAAGGGCACCGAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGAT > 1:1141214/1‑150 AACCTGGCCAACCCCGAGCAGGAGCTGCTGCTGGAAACCTTCAAGGGCACCGAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGT > 2:895330/1‑137 AACCTGGCCAACCCCGAGCAGGAGCTGCTGCTGGAAACCTTCAAGGGCACCGAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGT < 1:895330/137‑1 GGCCAACCCCGAGCAGGAGCTGCTGCTGGAAACCTTCAAGGGCACCGAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGTGCTAGTGTCCTGTCTCAGATAAAACGTTCTC < 1:232313/150‑1 CAACCCCGAGCAGGAGCTGCTGCTGGAAACCTTCAAGGGCACCGAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTT > 2:645209/1‑150 TTCAAGGGCACCGAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGC < 1:1179645/137‑1 TTCAAGGGCACCGAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGC > 2:1179645/1‑137 GAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGA > 1:680284/1‑92 GAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGA < 2:680284/92‑1 AGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCTCAA < 2:44789/150‑1 TGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGT < 1:299569/150‑1 GGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCCTCCCGCTCATGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCAC < 1:734728/150‑1 ACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATT > 2:1179136/1‑101 ACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATT < 1:1179136/101‑1 CGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGCTAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGAT > 1:525669/1‑117 CGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGAT < 2:525669/117‑1 GAAGACTCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGG < 1:786041/150‑1 TCCGGCGTGCCGCTCATGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTTG > 1:1082687/1‑150 CATGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTTGTGCAGCGCTAAAAA < 1:1111930/150‑1 TGATGGGCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTTGTGCAGCGCTAAAAACG > 1:488557/1‑150 ATGGGCTAGTGTCCTGTCTCAGCTACAACGTGCTCTTTATGCTCTTGTGCTATTGCTTCTCGGGCACCCTGTATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTTGTGCAGCGCTAAAAcccca < 1:645209/150‑6 GCTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCACCCCATACGTACCGAGAGGGTTGGGCGTTGTGCAGCGCTAAAAACGTGGTAA > 1:565224/1‑150 CTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTTGTGCAGCGCTAAAAACGTGGTAAT < 1:530302/150‑1 CAAGTTTCACAACCTGGCCAACCCCGAGCAGGAGCTGCTGCTGGAAACCTTCAAGGGCACCGAAGCCCTGTCGTGGGCGTTCAACTACGAACTGCTGCTGGTCTGCGAAGACTCCGGCGTGCCGCTCATGATGGGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3501363‑3501501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctagTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTTGTGCAGCGCTAAAAACGTGGTAAT < NC_002947/5062465‑5062320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |