| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3850591 = | 48 (1.060) | 5 (0.120) | 5/230 | NT | 10.4% | coding (29/474 nt) | PP_3398 | curli fiber surface‑exposed nucleator CsgB |
| ? | NC_002947 | 3850613 = | 42 (1.000) | coding (51/474 nt) | PP_3398 | curli fiber surface‑exposed nucleator CsgB | |||||
GCGGTTGCCTAACCCTTGTTGCTCGATCACCGCAGCCTGGCCGGCACCGGCCGGCAGCAGGCGGATGATCACTGGTTCACCGAGGTCGTTGCCGGGTGCAAGGTCGGCATTGTCCATCAGGTCCTCTGCCCAGCAGGCCTGGCCC‑GCCAGGGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3850748‑3850591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccaggcCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACCGCGCCGCCCTCGACC > NC_002947/3850613‑3850761 GCGGTTGCCTAACCCTTGTTGCTCGATCACCGCAGCCTGGCCGGCACCGGCCGGCAGCAGGCGGATGATCACTGGTTCACCGAGGTCGTTGCCGGGTGCAAGGTCGGCATTGTCCATCAGGTCCTCTGCCCAGCAGGCCTGGCCA‑GCCAG < 2:902279/150‑1 CGGTTGCCTAACCCTTGTTGCTCGATCACCGCAGCCTGGCCGGCACCGGCCGGCAGCAGGCGGATGATCACTGGTTCACCGAGGTCGTTGCCGGGTGCAAGGTCGGCATTGTCCATCAGGTCCTCCGCCCAGCAGGCCTGGCCC‑GCCAGG < 1:345159/150‑1 GTTGCCTAACCCTTGTTGCTCGATCACCGCAGCCTGGCCGGCACCGGCCGGCAGCAGGCGGATGATCACTGGTTCACCGAGGTCGTTGCCGGGTGCAAGGTCGGCATTGTCCATCAGGTCCTCTGCCCAGCAGGCCTGGCCC‑GCCAGGGC < 2:666468/150‑1 CCTTGTTGCTCGATCACCGCAGCCTGGCCGGCACCGGCCGGCAGCAGGCGGATGATCACTGGTTCACCGAGGTCGTTGCCGGGTGCAAGGTCGGCATTGTCCATCAGGTCCTCTGCCCAGCAGGCCTGGCCC‑GCCAGGGCCA > 1:353847/1‑142 CCTTGTTGCTCGATCACCGCAGCCTGGCCGGCACCGGCCGGCAGCAGGCGGATGATCACTGGTTCACCGAGGTCGTTGCCGGGTGCAAGGTCGGCATTGTCCATCAGGTCCTCTGCCCAGCAGGCCTGGCCC‑GCCAGGGCCA < 2:353847/142‑1 ATCACTGGTTCACCGAGGTCGTTGCCGGGTGCAAGGTCGGCATTGTCCATCAGGTCCTCTGCCCAGCAGGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGG < 1:724762/99‑1 ATCACTGGTTCACCGAGGTCGTTGCCGGGTGCAAGGTCGGCATTGTCCATCAGGTCCTCTGCCCAGCAGGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGG > 2:724762/1‑99 ACCGAGGTCGTTGCCGGGTGCAAGGTCGGCATTGTCCATCAGGTCCTCTGCCCAGCAGGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCCGAG < 2:1204537/93‑1 ACCGAGGTCGTTGCCGGGTGCAAGGTCGGCATTGTCCATCAGGTCCTCTGCCCAGCAGGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAG > 1:1204537/1‑93 GCCTGGCCC‑GCCAGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAG > 1:582173/1‑150 cCCTGCTGGGCAGAGGACCTGATGGACCATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCAACCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCTAGCACCAAGGGTTCGGCAACCGCGCCGCCCTCGAC < 2:336049/149‑1 CCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACCGCGCCGCCCTCGACC < 1:120410/150‑1 GCGGTTGCCTAACCCTTGTTGCTCGATCACCGCAGCCTGGCCGGCACCGGCCGGCAGCAGGCGGATGATCACTGGTTCACCGAGGTCGTTGCCGGGTGCAAGGTCGGCATTGTCCATCAGGTCCTCTGCCCAGCAGGCCTGGCCC‑GCCAGGGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3850748‑3850591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccaggcCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACCGCGCCGCCCTCGACC > NC_002947/3850613‑3850761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |