New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3850591 =48 (1.060)5 (0.120) 5/230 NT 10.4% coding (29/474 nt) PP_3398 curli fiber surface‑exposed nucleator CsgB
?NC_002947 3850613 = 42 (1.000)coding (51/474 nt) PP_3398 curli fiber surface‑exposed nucleator CsgB

TCCCGACTGCGGCACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACCGCGCCGCCCTCGACC  >  NC_002947/3850471‑3850761
                                                                                                                                               |                                                                                                                                                    
tcCCGACTGCGGCACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTggg                                                                                                                                               >  1:942438/1‑150 (MQ=255)
  ccGACTGCGGCACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGTGCa                                                                                                                                             <  1:102076/150‑1 (MQ=255)
  ccGACTGCGGCACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGAACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCa                                                                                                                                             >  1:1018761/1‑150 (MQ=255)
    gACTGCGGCACGTGCGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCaga                                                                                                                                           <  2:520024/150‑1 (MQ=255)
          ggCACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCt                                                                                                                                     <  1:127943/150‑1 (MQ=255)
            cACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGa                                                                                                                                   <  2:655087/150‑1 (MQ=255)
                gACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTCGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGa                                                                                                                               <  2:808107/150‑1 (MQ=255)
                    gCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGGAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAAt                                                                                                                           >  1:1033831/1‑150 (MQ=255)
                     cgacgaTCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATg                                                                                                                          <  2:578557/150‑1 (MQ=255)
                         gaTCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGa                                                                                                                      <  2:942438/150‑1 (MQ=255)
                         gaTCACCACCAGCAAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGa                                                                                                                      <  2:278243/150‑1 (MQ=255)
                             accaccAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCtt                                                                                                                  <  2:241081/150‑1 (MQ=255)
                               caccaGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGc                                                                                                                >  2:1020292/1‑150 (MQ=255)
                                accaGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCa                                                                                                               <  2:468665/150‑1 (MQ=255)
                                          gCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACg                                                                                                     >  1:755384/1‑150 (MQ=255)
                                             ccacGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGAcc                                                                                                  >  2:638210/1‑150 (MQ=255)
                                             ccacGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAAGGCCGACCTTGCACCCGGCAACGAcc                                                                                                  >  1:907710/1‑150 (MQ=255)
                                              cacGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCt                                                                                                 >  2:1021610/1‑150 (MQ=255)
                                              cacGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCt                                                                                                 >  2:234222/1‑150 (MQ=255)
                                               acGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGAc                                                                                                                                       <  1:1123728/111‑1 (MQ=255)
                                               acGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGAc                                                                                                                                       >  2:1123728/1‑111 (MQ=255)
                                                    atcactggttcaccgaggtcgttgccgggtgcaaggtcggcattgtccatcaggtcctctgcccagcaggcctggccctggcgggccaggcCTGCTggg                                                                                                                                               <  1:724762‑M2/8‑1 (MQ=255)
                                                    atcactggttcaccgaggtcgttgccgggtgcaaggtcggcattgtccatcaggtcctctgcccagcaggcctggccctggcgggccaggcCTGCTggg                                                                                                                                               >  2:724762‑M2/92‑99 (MQ=255)
                                                         tCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAg                                                                                      <  2:1018761/150‑1 (MQ=255)
                                                               accgaggtcgttgccgggtgcaaggtcggcattgtccatcaggtcctctgcccagcaggcctggccctggcgggccaggcCTGCTGGGCcgag                                                                                                                                          <  2:1204537‑M2/13‑1 (MQ=255)
                                                               accgaggtcgttgccgggtgcaaggtcggcattgtccatcaggtcctctgcccagcaggcctggccctggcgggccaggcCTGCTGGGCagag                                                                                                                                          >  1:1204537‑M2/81‑93 (MQ=255)
                                                                    gTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGatcaccgca                                                                           >  2:654845/1‑145 (MQ=255)
                                                                              aGCCGGAGGCTTCGATGGAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTgccgg                                                                 <  2:1033831/150‑1 (MQ=255)
                                                                               gacGGAGGCTTCGATGAACCGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCAGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTgccggc                                                                >  2:849637/3‑150 (MQ=255)
                                                                                   gAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGt                                                            >  2:150488/1‑150 (MQ=255)
                                                                                      gCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTCATGGCCAACGCCGACCTTGCACCCGGCAACGACCTCGGTGAGCTAGTGATCATCCGCCTGCTGCCGGCCGGTTcc                                                         <  1:352245/150‑1 (MQ=255)
                                                                                       cTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCCGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCg                                                        <  1:727827/150‑1 (MQ=255)
                                                                                            aTGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAg                                                   >  1:742328/1‑150 (MQ=255)
                                                                                             tGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAgg                                                  <  2:917494/150‑1 (MQ=255)
                                                                                              gAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGCACCGGccggca                                                 <  1:132536/150‑5 (MQ=255)
                                                                                                aaCGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTg                                               >  1:123574/1‑150 (MQ=255)
                                                                                                          cTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGa                                     <  1:251745/150‑1 (MQ=255)
                                                                                                           tCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAg                                    >  1:292246/1‑150 (MQ=255)
                                                                                                           ctctgcccagcagGCCTGGCCCGCCAGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGt                                                                                             >  1:1204537‑M1/14‑93 (MQ=255)
                                                                                                           ctcggcccagcagGCCTGGCCCGCCAGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGt                                                                                             <  2:1204537‑M1/80‑1 (MQ=255)
                                                                                                             ccTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGCTGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGca                                  >  1:192514/1‑150 (MQ=255)
                                                                                                             ccTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGca                                  >  2:94952/1‑150 (MQ=255)
                                                                                                             ccTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGca                                  >  1:443512/1‑150 (MQ=255)
                                                                                                              cTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGcaa                                 >  2:1197266/1‑150 (MQ=255)
                                                                                                                cccagcagGCCTGGCCCGCCAGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGat                                                                                  >  2:724762‑M1/9‑99 (MQ=255)
                                                                                                                cccagcagGCCTGGCCCGCCAGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGat                                                                                  <  1:724762‑M1/91‑1 (MQ=255)
                                                                                                                  tGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAg                             <  2:907710/150‑1 (MQ=255)
                                                                                                                    ctctGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAggg                           >  2:120410/1‑150 (MQ=255)
                                                                                                                     tctGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCctgc                                                                       <  2:699308/105‑1 (MQ=255)
                                                                                                                     tctGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCctgc                                                                       >  1:699308/1‑105 (MQ=255)
                                                                                                                         gcctggcccgccagggccaggcCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAg                       >  1:582173‑M2/23‑150 (MQ=255)
                                                                                                                           TGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAgg                            <  2:353847‑M1/142‑1 (MQ=255)
                                                                                                                           TGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAgg                            >  1:353847‑M1/1‑142 (MQ=255)
                                                                                                                             GCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAAc                  <  2:666468‑M1/150‑1 (MQ=255)
                                                                                                                               CCTGGCGGGCCAGGCCTGCTGGGCGGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACcg                <  1:345159‑M1/150‑1 (MQ=255)
                                                                                                                                CTGGCTGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACcgc               <  2:902279‑M1/150‑1 (MQ=255)
                                                                                                                                   gcGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACCGcgcc            <  1:862625/150‑1 (MQ=255)
                                                                                                                                             ccCTGCTGGGCAGAGGACCTGATGGACCATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCAACCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCTAGCACCAAGGGTTCGGCAACCGCGCCGCCCTCGAc   <  2:336049‑M2/148‑1 (MQ=255)
                                                                                                                                              cCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACCGCGCCGCCCTCGAcc  <  1:120410‑M2/149‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                                    
TCCCGACTGCGGCACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGCGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACCGCGCCGCCCTCGACC  >  NC_002947/3850471‑3850761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.