New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3850591 = | 48 (1.060) | 5 (0.120) | 5/230 | NT | 10.4% | coding (29/474 nt) | PP_3398 | curli fiber surface‑exposed nucleator CsgB |
? | NC_002947 | 3850613 = | 42 (1.000) | coding (51/474 nt) | PP_3398 | curli fiber surface‑exposed nucleator CsgB |
TCCCGACTGCGGCACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACCGCGCCGCCCTCGACC > NC_002947/3850471‑3850761 | tcCCGACTGCGGCACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTggg > 1:942438/1‑150 (MQ=255) ccGACTGCGGCACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGTGCa < 1:102076/150‑1 (MQ=255) ccGACTGCGGCACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGAACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCa > 1:1018761/1‑150 (MQ=255) gACTGCGGCACGTGCGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCaga < 2:520024/150‑1 (MQ=255) ggCACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCt < 1:127943/150‑1 (MQ=255) cACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGa < 2:655087/150‑1 (MQ=255) gACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTCGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGa < 2:808107/150‑1 (MQ=255) gCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGGAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAAt > 1:1033831/1‑150 (MQ=255) cgacgaTCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATg < 2:578557/150‑1 (MQ=255) gaTCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGa < 2:942438/150‑1 (MQ=255) gaTCACCACCAGCAAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGa < 2:278243/150‑1 (MQ=255) accaccAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCtt < 2:241081/150‑1 (MQ=255) caccaGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGc > 2:1020292/1‑150 (MQ=255) accaGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCa < 2:468665/150‑1 (MQ=255) gCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACg > 1:755384/1‑150 (MQ=255) ccacGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGAcc > 2:638210/1‑150 (MQ=255) ccacGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAAGGCCGACCTTGCACCCGGCAACGAcc > 1:907710/1‑150 (MQ=255) cacGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCt > 2:1021610/1‑150 (MQ=255) cacGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCt > 2:234222/1‑150 (MQ=255) acGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGAc < 1:1123728/111‑1 (MQ=255) acGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGAc > 2:1123728/1‑111 (MQ=255) atcactggttcaccgaggtcgttgccgggtgcaaggtcggcattgtccatcaggtcctctgcccagcaggcctggccctggcgggccaggcCTGCTggg < 1:724762‑M2/8‑1 (MQ=255) atcactggttcaccgaggtcgttgccgggtgcaaggtcggcattgtccatcaggtcctctgcccagcaggcctggccctggcgggccaggcCTGCTggg > 2:724762‑M2/92‑99 (MQ=255) tCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAg < 2:1018761/150‑1 (MQ=255) accgaggtcgttgccgggtgcaaggtcggcattgtccatcaggtcctctgcccagcaggcctggccctggcgggccaggcCTGCTGGGCcgag < 2:1204537‑M2/13‑1 (MQ=255) accgaggtcgttgccgggtgcaaggtcggcattgtccatcaggtcctctgcccagcaggcctggccctggcgggccaggcCTGCTGGGCagag > 1:1204537‑M2/81‑93 (MQ=255) gTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGatcaccgca > 2:654845/1‑145 (MQ=255) aGCCGGAGGCTTCGATGGAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTgccgg < 2:1033831/150‑1 (MQ=255) gacGGAGGCTTCGATGAACCGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCAGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTgccggc > 2:849637/3‑150 (MQ=255) gAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGt > 2:150488/1‑150 (MQ=255) gCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTCATGGCCAACGCCGACCTTGCACCCGGCAACGACCTCGGTGAGCTAGTGATCATCCGCCTGCTGCCGGCCGGTTcc < 1:352245/150‑1 (MQ=255) cTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCCGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCg < 1:727827/150‑1 (MQ=255) aTGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAg > 1:742328/1‑150 (MQ=255) tGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAgg < 2:917494/150‑1 (MQ=255) gAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGCACCGGccggca < 1:132536/150‑5 (MQ=255) aaCGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTg > 1:123574/1‑150 (MQ=255) cTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGa < 1:251745/150‑1 (MQ=255) tCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAg > 1:292246/1‑150 (MQ=255) ctctgcccagcagGCCTGGCCC‑GCCAGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGt > 1:1204537‑M1/14‑93 (MQ=255) ctcggcccagcagGCCTGGCCC‑GCCAGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGt < 2:1204537‑M1/80‑1 (MQ=255) ccTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGCTGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGca > 1:192514/1‑150 (MQ=255) ccTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGca > 2:94952/1‑150 (MQ=255) ccTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGca > 1:443512/1‑150 (MQ=255) cTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGcaa > 2:1197266/1‑150 (MQ=255) cccagcagGCCTGGCCC‑GCCAGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGat > 2:724762‑M1/9‑99 (MQ=255) cccagcagGCCTGGCCC‑GCCAGGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGat < 1:724762‑M1/91‑1 (MQ=255) tGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAg < 2:907710/150‑1 (MQ=255) ctctGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAggg > 2:120410/1‑150 (MQ=255) tctGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCctgc < 2:699308/105‑1 (MQ=255) tctGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCctgc > 1:699308/1‑105 (MQ=255) gcctggcccgccagggccaggcCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAg > 1:582173‑M2/23‑150 (MQ=255) TGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAgg < 2:353847‑M1/142‑1 (MQ=255) TGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAgg > 1:353847‑M1/1‑142 (MQ=255) GCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAAc < 2:666468‑M1/150‑1 (MQ=255) CCTGGC‑GGGCCAGGCCTGCTGGGCGGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACcg < 1:345159‑M1/150‑1 (MQ=255) CTGGC‑TGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACcgc < 2:902279‑M1/150‑1 (MQ=255) gc‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACCGcgcc < 1:862625/150‑1 (MQ=255) ccCTGCTGGGCAGAGGACCTGATGGACCATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCAACCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCTAGCACCAAGGGTTCGGCAACCGCGCCGCCCTCGAc < 2:336049‑M2/148‑1 (MQ=255) cCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACCGCGCCGCCCTCGAcc < 1:120410‑M2/149‑1 (MQ=255) | TCCCGACTGCGGCACCGACGGCGACGATCACCACCAGCCAAGGCACCACGCGCACCGTCAACGTAGTCGTGCAGTAAAAGCCGGAGGCTTCGATGAAACGGCTGTACTCCCTGTTGCTCTGCCTGGCCCTGGC‑GGGCCAGGCCTGCTGGGCAGAGGACCTGATGGACAATGCCGACCTTGCACCCGGCAACGACCTCGGTGAACCAGTGATCATCCGCCTGCTGCCGGCCGGTGCCGGCCAGGCTGCGGTGATCGAGCAACAAGGGTTAGGCAACCGCGCCGCCCTCGACC > NC_002947/3850471‑3850761 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |