New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3903097	40 (0.890)	4 (0.090)	4/240	NT	9.4%	intergenic (+18/+97)	PP_3445/ilvA‑I	hypothetical protein/threonine deaminase
	?	NC_002947	= 3903142	38 (0.870)					intergenic (+63/+52)	PP_3445/ilvA‑I	hypothetical protein/threonine deaminase

TGCTGGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3902961‑3903097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcGCTGCGTGACCGCCCCGCCCGAAGGGC‑AGGGCGATCTCCTGCAGGGAACTGCGCGAGCCAATTTCAACGCTCGCGCATGAAAAAGCCGGCAACGAACTTGCGGAACGTTTCCAGGCTTTTGAAGTCGGCGTAGCGCTTGAAGTTCTCG  <  NC_002947/3903142‑3902995                                                                                                                                                                                                                                                                                                TGCTGGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCGCTGCGTGACCGC                                                                                                                                          >  1:872880/1‑150                                      GAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCGCTGCGTGACCGCCCCGCCCGAAGGGC‑AGGGCGATCTCCTGCAGGGAACT                                                                                                    <  2:872880/150‑1                                                                                                GGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCGCTGCGTGACCGCCCCGCCCGAAGGGC‑AGGGCGATCTCCTGCAGGGAA                                                                                                      <  1:524048/90‑1                                                                                                GGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCGCTGCGTGACCGCCCCGCCCGAAGGGC‑AGGGCGATCTCCTGCAGGGAA                                                                                                      >  2:524048/1‑90                                                                                                                                       TTCGCTGCGTGACCGCCCCGCCCGAAGGGCAACGACGAT‑TCCTGCAGGGAACTGCGCGAGCCAATTTCAACGCTCGCGCATGAAAAAGCCGGCAACGAACTTGAGGAACGTTTCCAGGCTTTTGAAGTCGGCGTAGCGCTTGAAGTTCTC   >  1:1188858/1‑150                                                                                                                                       TTCGCTGCGTGACCGCCCCGCCCGAAGGGC‑AGGGCGATCTCCTGCAGGGAACTGCGCGAGCCCATTTCAACGCTCGCGCATGAAAAAGCCGGCAACGAACTTGCGGAACGTTTCCAGGCTTTTGAAGTCGGCGTAGCGCTTGAAGTTCTC   >  2:418356/1‑150                                                                                                                                       TTCGCTGCGTGACCGCCCCGCCCGAAGGGC‑AGGGCGATCTCCTGCAGGGAACTGCGCGAGCCAATTTCAACGCTCGCGCATGAAAAAGCCGGCAACGAACTTGCGGAACGTTTCCAGGCTTTTGAA                           >  1:587746/1‑126                                                                                                                                       TTCGCTGCGTGACCGCCCCGCCCGAAGGGC‑AGGGCGATCTCCTGCAGGGAACTGCGCGAGCCAATTTCAACGCTCGCGCATGAAAAAGCCGGCAACGAACTTGCGGAACGTTTCCAGGCTTTTGAA                           <  2:587746/126‑1                                                                                                                                        TCGCTGCGTGACCGCCCCGCCCGAAGGGC‑AGGGCGATCTCCTGCAGGGAACTGCGCGAGCCAATTTCAACGCTCGCGCATGAAAAAGCCGGCAACGAACTTGCGGAACGTTTCCAGGCTTTTGAAGTCGGCGTAGCGCTTGAAGTTCTCG  <  2:883320/150‑1                                                                                                                                                                                                                                                                                                TGCTGGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3902961‑3903097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcGCTGCGTGACCGCCCCGCCCGAAGGGC‑AGGGCGATCTCCTGCAGGGAACTGCGCGAGCCAATTTCAACGCTCGCGCATGAAAAAGCCGGCAACGAACTTGCGGAACGTTTCCAGGCTTTTGAAGTCGGCGTAGCGCTTGAAGTTCTCG  <  NC_002947/3903142‑3902995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.