New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3903097	40 (0.890)	4 (0.090)	4/240	NT	9.4%	intergenic (+18/+97)	PP_3445/ilvA‑I	hypothetical protein/threonine deaminase
	?	NC_002947	= 3903142	38 (0.870)					intergenic (+63/+52)	PP_3445/ilvA‑I	hypothetical protein/threonine deaminase

GTGTCGCTGCTGGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCG  >  NC_002947/3902954‑3903244                                                                                                                                                |                                                                                                                                                     gtgtCGCTGCTGGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCa                                                                                                                                                <  1:891050/150‑1 (MQ=255)      gctgctGGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGgaga                                                                                                                                           <  2:85395/150‑1 (MQ=255)        tgctgGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCgctgcgtgaccgc                                                                                                                                         >  1:872880‑M1/1‑137 (MQ=255)        tgctgGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATc                                                                                                                                         >  2:681194/1‑150 (MQ=255)          ctgGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCgc                                                                                                                                       >  2:712389/1‑150 (MQ=255)          ctgGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCgc                                                                                                                                       >  2:658338/1‑150 (MQ=255)           tgGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCgcc                                                                                                                                      >  2:1092554/1‑150 (MQ=255)           tgGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCgcc                                                                                                                                      >  2:906350/1‑150 (MQ=255)           tgGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCgcc                                                                                                                                      <  1:712389/150‑1 (MQ=255)            ggAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCgccc                                                                                                                                     <  1:681194/150‑1 (MQ=255)                   cccATCGGCCCCTAGCCGGATACCGAGAACTTGAAGCGCTAGGCGGACGTCAAAAGCGTGGAAACGGTACGCAAGTTCGTTGATCGCGGTTGCATGCGCAAGCTTAAAAATAGACTCGCGCAGTTCCCTGCAGGAGATAGCCCT‑GCCCtt                                                                                                                             >  2:156331/1‑150 (MQ=255)                     cATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTcg                                                                                                                           <  1:658338/150‑1 (MQ=255)                       acccccccTAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCCCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTcggg                                                                                                                         <  2:558698/146‑1 (MQ=255)                             ccGAGCCGGATACCGAGAACTTCAAGCGGGACGCCGACTGCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGAGTTTTCATGCGCGAGCGTTGAAATTGGCGCGCGCAGTTCCCTGCAGGAGATCGCTGT‑TGCCCTcgggcgacag                                                                                                                   <  2:112476/150‑5 (MQ=255)                             ccGAGCCGGATACCGAAAACTTAAAACGTCTGGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCgggcggggc                                                                                                                   <  1:70/150‑1 (MQ=255)                                    ggATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACg                                                                                                            >  1:672018/1‑150 (MQ=255)                                          cGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCga                                                                                                      <  2:883320‑M2/150‑3 (MQ=255)                                           gagaACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCTCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGA‑ATCGTCGTTGCCCTTCGGGCGGGGCGGTCACGCAGCgaa                                                                                                     >  1:1188858‑M2/1‑147 (MQ=255)                                           gagaACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATGGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCgaa                                                                                                     >  2:418356‑M2/1‑147 (MQ=255)                                             gaACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCgctgcgtgaccgccccgcccgaagggcagggcgatctcctgcagggaact                                                                                                    <  2:872880‑M1/150‑51 (MQ=255)                                                cTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACAcag                                                                                                <  1:883320/150‑1 (MQ=255)                                                 ttCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACAcagg                                                                                               >  1:864048/1‑150 (MQ=255)                                                 ttCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACAcagg                                                                                               <  2:1192919/150‑1 (MQ=255)                                                         cTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACAcaggcggcaggc                                                                                       <  2:1056213/150‑1 (MQ=255)                                                            cGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCGCTTCGGGCGGGGCGGTCACGCAGCGAACACaggcggcaggcggc                                                                                    >  2:869867/1‑150 (MQ=255)                                                                   ttCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCgaa                                                                                                     >  1:587746‑M2/1‑123 (MQ=255)                                                                   ttCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCgaa                                                                                                     <  2:587746‑M2/126‑4 (MQ=255)                                                                   ttCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAg                                                                             >  1:1161001/1‑150 (MQ=255)                                                                   ttCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAg                                                                             <  2:1104730/150‑1 (MQ=255)                                                                                aaaCGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGcc                                                                <  1:1092554/150‑1 (MQ=255)                                                                                           aaGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAg                                                                             >  2:1109980/1‑126 (MQ=255)                                                                                           aaGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAg                                                                             <  1:1109980/126‑1 (MQ=255)                                                                                                   tGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCa                                             <  1:68653/150‑1 (MQ=255)                                                                                                   tGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCGAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCa                                             <  2:53526/150‑1 (MQ=255)                                                                                                       ggCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCgctgcgtgaccgccccgcccgaagggcagggcgatctcctgcagggaa                                                                                                      <  1:524048‑M1/90‑49 (MQ=255)                                                                                                       ggCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCgctgcgtgaccgccccgcccgaagggcagggcgatctcctgcagggaa                                                                                                      >  2:524048‑M1/1‑42 (MQ=255)                                                                                                       ggCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACa                                                                              >  2:1122329/1‑113 (MQ=255)                                                                                                       ggCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACa                                                                              <  1:1122329/113‑1 (MQ=255)                                                                                                       ggCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGcc                                                                <  1:460425/127‑1 (MQ=255)                                                                                                       ggCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGcc                                                                >  2:460425/1‑127 (MQ=255)                                                                                                                 tGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTAc                               <  1:156331/150‑1 (MQ=255)                                                                                                                      gtgCGTTGACATTGTCTCGAGCGATTCCGTGACCGCGATGACCCA‑GACGTTCGAGCGGGGGCTTTCCGCAGCGGACGCAGGCCGCAGGCGGCTCAGCAGGCGTGCATTGGCCGGACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCgg                          <  2:211528/148‑1 (MQ=255)                                                                                                                              aaaTTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAg                  >  1:189808/1‑150 (MQ=255)                                                                                                                                  tGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGtctc              <  1:906350/150‑1 (MQ=255)                                                                                                                                  tGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGtctc              <  1:869867/150‑1 (MQ=255)                                                                                                                                     tttgtccAGTTACCTGCATAAGATCGCCCT‑GTCCGTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTc           <  2:672018/144‑1 (MQ=255)                                                                                                                                      tCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTcc          >  1:1065861/1‑150 (MQ=255)                                                                                                                                          gcAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGccc                                              >  1:489425/1‑110 (MQ=255)                                                                                                                                          gcAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGccc                                              <  2:489425/110‑1 (MQ=255)                                                                                                                                            aGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCgaactgcgcgagccaatttcaacgctcgcgcatgaaaaagccggcaacgaacttgcggaacgtttccaggcttttgaagtcggcgtagcgcttgaagttc    <  2:872880‑M2/150‑101 (MQ=255)                                                                                                                                              ttCgctgcgtgaccgccccgcccgaagggcagggcgatctcctgcagggaactgcgcgagcccatttcaacgctcgcgcatgaaaaagccggcaacgaacttgcggaacgtttccaggcttttgaagtcggcgtagcgcttgaagttctc   >  2:418356‑M1/1‑3 (MQ=255)                                                                                                                                              ttCgctgcgtgaccgccccgcccgaagggcagggcgatctcctgcagggaactgcgcgagccaatttcaacgctcgcgcatgaaaaagccggcaacgaacttgcggaacgtttccaggcttttgaa                           >  1:587746‑M1/1‑3 (MQ=255)                                                                                                                                              ttCgctgcgtgaccgccccgcccgaagggcagggcgatctcctgcagggaactgcgcgagccaatttcaacgctcgcgcatgaaaaagccggcaacgaacttgcggaacgtttccaggcttttgaa                           <  2:587746‑M1/126‑124 (MQ=255)                                                                                                                                              ttCgctgcgtgaccgccccgcccgaagggcaacgacgattcctgcagggaactgcgcgagccaatttcaacgctcgcgcatgaaaaagccggcaacgaacttgaggaacgtttccaggcttttgaagtcggcgtagcgcttgaagttctc   >  1:1188858‑M1/1‑3 (MQ=255)                                                                                                                                              ttCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCgaactgcgcgagccaatttcaacgctcgcgcatgaaaaagcc                                                              <  1:524048‑M2/90‑43 (MQ=255)                                                                                                                                              ttCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCgaactgcgcgagccaatttcaacgctcgcgcatgaaaaagcc                                                              >  2:524048‑M2/1‑48 (MQ=255)                                                                                                                                               tCgctgcgtgaccgccccgcccgaagggcagggcgatctcctgcagggaactgcgcgagccaatttcaacgctcgcgcatgaaaaagccggcaacgaacttgcggaacgtttccaggcttttgaagtcggcgtagcgcttgaagttctcg  <  2:883320‑M1/150‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     GTGTCGCTGCTGGAACAGCCCATCGGCCCCGAGCCGGATACCGAGAACTTCAAGCGCTACGCCGACTTCAAAAGCCTGGAAACGTTCCGCAAGTTCGTTGCCGGCTTTTTCATGCGCGAGCGTTGAAATTGGCTCGCGCAGTTCCCTGCAGGAGATCGCCCT‑GCCCTTCGGGCGGGGCGGTCACGCAGCGAACACAGGCGGCAGGCGGCTAGACAGGCGTGCATTGGCCGCACAGGCGCGTCAGCCCAGGAACAGCTTGTACGCCGGGTTGTCAGTCTCGTCCCAGTACCG  >  NC_002947/3902954‑3903244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.