New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3945563	47 (1.040)	4 (0.090)	4/240	NT	8.0%	coding (780/810 nt)	PP_3482	hypothetical protein
	?	NC_002947	= 3945582	47 (1.080)					coding (761/810 nt)	PP_3482	hypothetical protein

TCTGCAAGCGTTGCTGCAGCAGCACCAGGCCGGCGACCATGGCGCAGGCAAGGGCGAGCAGCGACCAAACCAACGGTCCGCTGCGCCGTGGCTGGAATTCCAGGTCGAGGCGGCGCATGTCAGGCCACCGCCCGCCACATGGCGCACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3945414‑3945563 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcCGGCCAGCGAAGCCGACCCGCTGTGCGCCATGTGGCGGGCGGTGGCCTGACATGCGCCGCCTCGACCTGGAATTCCAGCCACGGCGCAGCGGACCGTTGGTTTGGTCGCTGCTCGCCCTTGCCTGCGCCATGGTCGCCGGCCTGGTG  <  NC_002947/3945582‑3945436                                                                                                                                                                                                                                                                                                           TCTGCAAGCGTTGCTGCAGCAGCACCAGGCCGGCGACCATGGCGCAGGCAAGGGCGAGCAGCGACCAAACCAACGGTCCGCTGCGCCGTGGCTGGAATTCCAGGTCGAGGCGGCGCATGTCAGGCCACCGCCCGCCACATGGCGCACAGC                                                                                                                                                     <  2:1165233/150‑1                                                                       CAACGGTCCGCTGCGCCGTGGCTGGAATTCCAGGTCGAGGCGGCGCATGTCAGGCCACCGCCCGCCACATGGCGCACAGCCGGCCAGCGAAGCCGACCCGCTGT                                                                                                                             <  1:242525/104‑1                                                                       CAACGGTCCGCTGCGCCGTGGCTGGAATTCCAGGTCGAGGCGGCGCATGTCAGGCCACCGCCCGCCACATGGCGCACAGCCGGCCAGCGAAGCCGACCCGCTGT                                                                                                                             >  2:242525/1‑104                                                                               CGCTGCGTCGTGGCTGGAATTCCAGGTCGAGGCGGCGCATGTCAGGCCACCGCCCGCCACATGGCGCACAGCCGGCCAGCGAAGCCGACCCGCTGTGC                                                                                                                           >  1:396856/1‑98                                                                               CGCTGCGTCGTGGCTGGAATTCCAGGTCGAGGCGGCGCATGTCAGGCCACCGCCCGCCACATGGCGCACAGCCGGCCAGCGAAGCCGACCCGCTGTGC                                                                                                                           <  2:396856/98‑1                                                                                                                                                   CAGCCGGCCAGCGAAGCCGACCCGCTGTGCGCCATGTGGCGGGCGGTGGCCTGACATGCGCCGCCTCGACCTGGAATTCCAGCCACGGCGCAGCGGACCGTTGGTTTGGTCGCTGCTCGCCGTTGCTTTCGCCATGGTCGCCGGCCTGGT   >  1:71/1‑150                                                                                                                                                    AGCCGGCCAGCGAAGCCGACCCGCTGTGCGCCATGTGGCGGGCGGTGGCCTGACATGCGCCGCCTCGACCTGGAATTCCAGCCACGGCGCAGCGGACCGTTGGTTTGGTCGCTGCTCGCCCTTGCCTGCGCCATGGTCGCCGGCCTGGTG  >  1:525101/1‑150                                                                                                                                                     GCCGGCCAGCGAAGCCGACCCGCTGTGCGCCATGTGGCGGGCGGTGGCCTGACATGCGCCGCCTCGACCTGGAATTCCAGCCACGGCGCAGCGGACCGTTGGTTTGGTCGGTGCTCGCCCTTGCCTGCGCCATG                 >  1:214365/1‑134                                                                                                                                                     GCCGGCCAGCGAAGCCGACCCGCTGTGCGCCATGTGGCGGGCGGTGGCCTGACATGCGCCGCCTCGACCTGGAATTCCAGCCACGGCGCAGCGGACCGTTGGTTTGGTCGGTGCTCGCCCTTGCCTGCGCCATG                 <  2:214365/134‑1                                                                                                                                                                                                                                                                                                           TCTGCAAGCGTTGCTGCAGCAGCACCAGGCCGGCGACCATGGCGCAGGCAAGGGCGAGCAGCGACCAAACCAACGGTCCGCTGCGCCGTGGCTGGAATTCCAGGTCGAGGCGGCGCATGTCAGGCCACCGCCCGCCACATGGCGCACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3945414‑3945563 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcCGGCCAGCGAAGCCGACCCGCTGTGCGCCATGTGGCGGGCGGTGGCCTGACATGCGCCGCCTCGACCTGGAATTCCAGCCACGGCGCAGCGGACCGTTGGTTTGGTCGCTGCTCGCCCTTGCCTGCGCCATGGTCGCCGGCCTGGTG  <  NC_002947/3945582‑3945436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.