New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4039105	47 (1.040)	3 (0.070)	3/242	NT	6.3%	intergenic (+11/‑83)	PP_3559/PP_3560	glycine betaine ABC transporter permease/LysR family transcriptional regulator
	?	NC_002947	= 4039142	44 (1.000)					intergenic (+48/‑46)	PP_3559/PP_3560	glycine betaine ABC transporter permease/LysR family transcriptional regulator

GCCCGTGGATTGGGTGAAGATGTGCTGGCGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4038954‑4039105 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGCCGATACGGCTCAGCGACTGCTACGCCCATAGGCCTGGCTGATCCGGTCGATCACCATGGCCAGGGCGACAATTGCCAGCCCGGCCTCCATCCCTTGGCCAACATTCAAG  <  NC_002947/4039142‑4038995                                                                                                                                                                                                                                                                                                              GCCCGTGGATTGGGTGAAGATGTGCTGGCGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCG                                                                                                                                                        <  2:631316/150‑1   CCGTGGATTGGGTGAAGATGTGCTGGCGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGg                                                                                                                                                      >  2:229999/1‑149                                          CTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTT                                                                                                                 <  1:359419/148‑1                                          CTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTT                                                                                                                 >  2:359419/1‑148                                                  TTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGCCGATACGG                                                                                                       <  1:568417/150‑1                                                                                                                                                       GCCCGGCCCTCTCGTAGCACAAGGGTGCTTCCAGGCCTTGCCGATACGGCTCAGCGACTGCTACGCCCATAGGCCTGGCTGATCCGGTCGATCACCATGGCCAGGGCGACAATTGCCAGCCCGGCCTCCATCCCTTGGCCAACATTCAAG  <  2:1183607/150‑1                                                                                                                                                                                                                                                                                                              GCCCGTGGATTGGGTGAAGATGTGCTGGCGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4038954‑4039105 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCCGGCCCTCTCGCAGCACAAGGCTGCTTCCAGGCCTTGCCGATACGGCTCAGCGACTGCTACGCCCATAGGCCTGGCTGATCCGGTCGATCACCATGGCCAGGGCGACAATTGCCAGCCCGGCCTCCATCCCTTGGCCAACATTCAAG  <  NC_002947/4039142‑4038995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.