New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4039105	47 (1.040)	3 (0.070)	3/242	NT	6.3%	intergenic (+11/‑83)	PP_3559/PP_3560	glycine betaine ABC transporter permease/LysR family transcriptional regulator
	?	NC_002947	= 4039142	44 (1.000)					intergenic (+48/‑46)	PP_3559/PP_3560	glycine betaine ABC transporter permease/LysR family transcriptional regulator

TGAAGATGTGCTGGCGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCTTGGTGACCATCGCCCGCCACGGCACCTTTGCCCGCGCCGCC  >  NC_002947/4038968‑4039253                                                                                                                                          |                                                                                                                                                     tGAAGATGTGCTGGCGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCGGTCGCTGAGCCGTATCGGCAAGGCCTGGAag                                                                                                                                          >  2:100280/1‑150 (MQ=255)   aaGATGTGCTGGCGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCGGTCGCTGAGCCGTATCGGCAAGGCCTGGAagca                                                                                                                                        <  1:100280/150‑1 (MQ=255)            tGGCGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGTCCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGtgc                                                                                                                               <  1:1180417/150‑1 (MQ=255)               cGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGtgctgc                                                                                                                            <  1:951900/150‑1 (MQ=255)                gggAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCg                                                                                                                           >  1:182762/1‑150 (MQ=255)                ctgcttCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAagcag                                                                                                                                       >  2:207972/6‑138 (MQ=255)                ctgcttCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAagcag                                                                                                                                       <  1:207972/133‑1 (MQ=255)                    aTCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGagag                                                                                                                       >  1:121388/1‑150 (MQ=255)                     tCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAgg                                                                                                                      <  2:705335/150‑1 (MQ=255)                            cTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCccggccctctcgcagcacaaggctgcttccaggcctt                                                                                                                 >  2:359419‑M1/1‑111 (MQ=255)                            cTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCccggccctctcgcagcacaaggctgcttccaggcctt                                                                                                                 <  1:359419‑M1/148‑38 (MQ=255)                            cTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAagcagcacaa                                                                                                                                  <  2:685017/131‑5 (MQ=255)                            cTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAagcagcacaa                                                                                                                                  >  1:685017/1‑127 (MQ=255)                            cTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCACCCTTGTGCTACGAGAGGGCCGGgc                                                                                                               <  2:1183607‑M2/150‑3 (MQ=255)                                 aTGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTGTCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGAc                                                                                                          >  2:973847/1‑150 (MQ=255)                                    ttGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCccggccctctcgcagcacaaggctgcttccaggccttgccgatacgg                                                                                                       <  1:568417‑M1/150‑48 (MQ=255)                                       gCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAgg                                                                                                                      <  2:889903/132‑1 (MQ=255)                                       gCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAgg                                                                                                                      >  1:889903/1‑132 (MQ=255)                                             ggATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTg                                                                                              >  1:855842/1‑150 (MQ=255)                                                    ggCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCCGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTg                                                                                       >  2:665142/1‑150 (MQ=255)                                                        gggCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGaa                                                                                   >  1:1044291/1‑150 (MQ=255)                                                              gaaaTTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGAc                                                                             <  2:456546/148‑1 (MQ=255)                                                              gCAATTGTCGCCCTGGGCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGAc                                                                             <  2:155920/150‑1 (MQ=255)                                                              gCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGAc                                                                             <  1:920749/150‑1 (MQ=255)                                                                aaTTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCt                                                                           >  1:163570/1‑150 (MQ=255)                                                                     tCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGTCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAAcc                                                                      >  2:402873/1‑150 (MQ=255)                                                                     tCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAAcc                                                                      >  1:342534/1‑150 (MQ=255)                                                                       gCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGc                                                                    <  1:692742/150‑1 (MQ=255)                                                                        cccTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCa                                                                   >  1:280430/1‑150 (MQ=255)                                                                         ccTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCAt                                                                  >  1:520780/1‑150 (MQ=255)                                                                         ccTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTACGAGAGGGCCGGGCCTCACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCAt                                                                  <  1:1183607/150‑1 (MQ=255)                                                                            ggCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCATcccggctgc                                                               >  2:969236/1‑143 (MQ=255)                                                                               cATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGACCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCt                                                            >  2:334068/1‑150 (MQ=255)                                                                               cATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCGGAGCCGTATCGGCAAGGCCTGCAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGAAAATAGTCCTCGTTCAGTTGAGAACCGGGCCTCAATCGAATGTGCCt                                                            >  2:499118/1‑150 (MQ=255)                                                                                    tGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAg                                                       <  2:1044291/150‑1 (MQ=255)                                                                                      aTCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTGTCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGcc                                                     <  1:973847/150‑1 (MQ=255)                                                                                       tCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGccc                                                    >  2:1156299/1‑150 (MQ=255)                                                                                        caaCCGGATCAACCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCt                                                   <  1:499118/148‑1 (MQ=255)                                                                                         gACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTg                                                  >  2:1130411/1‑150 (MQ=255)                                                                                          acgggATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTgc                                                 >  1:1205289/4‑150 (MQ=255)                                                                                            cGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTgcgc                                               >  2:361872/1‑150 (MQ=255)                                                                                                tCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCt                                           >  1:899674/1‑150 (MQ=255)                                                                                                  aGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCTTg                                         <  2:182762/150‑1 (MQ=255)                                                                                                   gCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCTTgg                                        >  1:321566/1‑150 (MQ=255)                                                                                                    ccAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCtt                                          >  1:171472/1‑147 (MQ=255)                                                                                                    ccAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCtt                                          <  2:171472/147‑1 (MQ=255)                                                                                                    ccAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCTTGGt                                       <  2:321566/150‑1 (MQ=255)                                                                                                             tGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCTTg                                         <  2:1066881/139‑1 (MQ=255)                                                                                                             tGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCTTg                                         >  1:1066881/1‑139 (MQ=255)                                                                                                                         tCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCTTGGTGACCATCGCCCGCCACGGCAc                  <  2:855842/150‑1 (MQ=255)                                                                                                                           gCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCTTGGTGACCATCGCCCGCCACGGCACCt                >  1:1191640/1‑150 (MQ=255)                                                                                                                                 ccGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGgccgatacggctcagcgactgctacgcccataggcctggctgatccggtcgatcaccatggccagggcgacaattgccagcccggcctccatcccttggccaa          <  1:568417‑M2/150‑104 (MQ=255)                                                                                                                                         gcccggccctctcgtagcacaagggtgcttccaggccttgccgatacggctcagcgactgctacgcccataggcctggctgatccggtcgatcaccatggccagggcgacaattgccagcccggcctccatcccttggccaacattcaag  <  2:1183607‑M1/150‑149 (MQ=255)                                                                                                                                         gCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCTTGGTGACCATCGCCCGCCACGGCACCTTTGCCCGCgccgcc  <  1:361872/150‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                     TGAAGATGTGCTGGCGGGAATCCAGACCTTGAATGTTGGCCAAGGGATGGAGGCCGGGCTGGCAATTGTCGCCCTGGCCATGGTGATCGACCGGATCAGCCAGGCCTATGGGCGTAGCAGTCGCTGAGCCGTATCGGCAAGGCCTGGAAGCAGCCTTGTGCTGCGAGAGGGCCGGGCCTGACAATACGCCTCTGTCAGCTGAGAACCGGACCTCAACCGCATGTCCCTGAAAGCCCTGCGCACCTTGGTGACCATCGCCCGCCACGGCACCTTTGCCCGCGCCGCC  >  NC_002947/4038968‑4039253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.