| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4336935 = | 60 (1.330) | 3 (0.070) | 3/232 | NT | 5.2% | coding (324/885 nt) | PP_3811 | LysR family transcriptional regulator |
| ? | NC_002947 | 4337001 = | 53 (1.260) | coding (258/885 nt) | PP_3811 | LysR family transcriptional regulator | |||||
GATGCCACGCCACTGGGGCAGCACTACTACCAGTCGGCCCTGCGCCTGCTGGGTGAAGTGCAGCAGGTCGAACACGACATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4337090‑4336935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgggcCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTG > NC_002947/4337001‑4337144 GATGCCACGCCACTGGGGCAGCACTACTACCAGTCGGCCCTGCGCCTGCTGGGTGAAGTGCAGCAGGTCGAACACGACATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCAC > 2:724084/1‑150 CCACGCCACTGGGGCAGCACTACTACCAGTCGGCCCTGCGCCTGCTGGGTGAAGTGCAGCAGGTCGAACACGACATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGG < 1:389257/150‑1 CCACGCCACTGGGGCAGCACTACTACCAGTCGGCCCTGCGCCTGCTGGGTGAAGTGCAGCAGGTCGAACACGACATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGG < 2:185896/150‑1 CACGCCACTGGGGCAGCACTACTACCAGTCGAAAAAGCGCCGGCTGGGTGAAGTGCAGCAGGTCGAACACGACATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGG < 2:401169/150‑1 GCCTGCTGGGTGAAGTGCAGCAGGTCGAACACGACATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGG < 1:1176433/112‑1 GCCTGCTGGGTGAAGTGCAGCAGGTCGAACACGACATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGG > 2:1176433/1‑112 AGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCC > 1:559462/1‑150 CGGCCAGACGCACGTCCTGCTCTTCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCA < 2:559462/150‑1 CCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTG > 2:659485/1‑150 CTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTG < 2:19864/150‑1 CTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGG > 1:153845/1‑106 CTGGGCCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGG < 2:153845/106‑1 GATGCCACGCCACTGGGGCAGCACTACTACCAGTCGGCCCTGCGCCTGCTGGGTGAAGTGCAGCAGGTCGAACACGACATCAGCGGCCAGGCCCAGGTCCTGCGCGGCACCTTGCGCCTGAGCGCGCCGCTGTCGTTTGCCATGGCGCACCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4337090‑4336935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgggcCTGGCCGCTGATGTCGTGTTCGACCTGCTGCACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTG > NC_002947/4337001‑4337144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |