New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4466688	55 (1.220)	8 (0.180)	8/246	NT	13.1%	coding (387/1362 nt)	nhaA‑II	Na(+)/H(+) antiporter NhaA
	?	NC_002947	= 4466713	52 (1.160)					coding (412/1362 nt)	nhaA‑II	Na(+)/H(+) antiporter NhaA

GCACTGTCCAGCCTGCGTCAAGCCACGCTTCCCATGGCAGCCGCTGTCGGCGGCGTAGCGGTACCCGCACTCCTCTACCTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4466605‑4466688 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTTGGTCTGCTGGCGCGTGACCAAAACTCAGGTAG  <  NC_002947/4466713‑4466679                                                                                                                         GCACTGTCCAGCCTGCGTCAAGCCACGCTTCCCATGGCAGCCGCTGTCGGCGGCGTAGCGGTACCCGCACTCCTCTACCTGAGTTTTGGTCTGCTGGCGCGTGACCAAAACTCA       <  1:123104/114‑1 GCACTGTCCAGCCTGCGTCAAGCCACGCTTCCCATGGCAGCCGCTGTCGGCGGCGTAGCGGTACCCGCACTCCTCTACCTGAGTTTTGGTCTGCTGGCGCGTGACCAAAACTCA       >  2:123104/1‑114                     AGCCACGCTTCCCATGTCAGCCGCTGTCGGCGGCGTAGCGGTACCCGCACTCCTCTACCTGAGTGTTGGTCTGCTGGCGCGTGACCAAAA           <  2:585928/90‑1                     AGCCACGCTTCCCATGGCAGCCGCTGTCGGCGGCGTAGCGGTACCCGCACTCCTCTACCTGAGTGTTGGTCTGCTGGCGCGTGACCAAAA           >  1:585928/1‑90                      GCCACGCTTCCCATGGCAGCCGCTGTCGGCGGCGTAGCGGTACCCGCACTCCTCTACCTGAGTGTTGGTCTGCTGGCGCGTGACCAAAACTCAGGTAG  <  1:1082087/98‑1                      GCCACGCTTCCCATGGCAGCCGCTGTCGGCGGCGTAGCGGTACCCGCACTCCTCTACCTGAGTGTTGGTCTGCTGGCGCGTGACCAAAACTCAGGTAG  >  2:1082087/1‑98                                 CATGGCAGCCGCTGTCGGCGGCGTAGCGGTACCCGCACTCCTCTACCTGAGTTTTGGTCTGCTGGCGCGTGAC                >  1:832412/1‑73                                 CATGGCAGCCGCTGTCGGCGGCGTAGCGGTACCCGCACTCCTCTACCTGAGTTTTGGTCTGCTGGCGCGTGAC                <  2:832412/73‑1                                                                                                                         GCACTGTCCAGCCTGCGTCAAGCCACGCTTCCCATGGCAGCCGCTGTCGGCGGCGTAGCGGTACCCGCACTCCTCTACCTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4466605‑4466688 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTTGGTCTGCTGGCGCGTGACCAAAACTCAGGTAG  <  NC_002947/4466713‑4466679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.