New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4861197	55 (1.220)	12 (0.330)	9/198	NT	19.4%	intergenic (‑103/+134)	ligA/PP_4275	DNA ligase/cell division protein ZipA
	?	NC_002947	= 4861238	56 (1.550)					intergenic (‑144/+93)	ligA/PP_4275	DNA ligase/cell division protein ZipA

ACGTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4861027‑4861197 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctcttcgcgggtaaacccgctccTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAAGACAAATCCCATGA  <  NC_002947/4861238‑4861091                                                                                                                                                                                                                                                                                                                                 ACGTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCT                                                                                                                                                                           >  2:970675/1‑150       TAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGC                                                                                                                                                                     >  2:191240/1‑150         GCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGG                                                                                                                                                                   >  1:949893/1‑150            ATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTA                                                                                                                                                                >  2:1174805/1‑150            ATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTA                                                                                                                                                                >  2:1086076/1‑150               ATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAAC                                                                                                                                                             <  1:523164/150‑1                        ATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCC                                                                                                                                                      >  2:761977/1‑148                        ATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCC                                                                                                                                                      <  1:761977/148‑1                                         GTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAATCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCC                                                                                                                                   >  2:1126685/1‑150                                             GAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAAC                                                                                                                                                             >  1:1106556/1‑120                                             GAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAAC                                                                                                                                                             <  2:1106556/120‑1                                                     GGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGA                                                                                                                       >  1:1006894/1‑150                                                                   ATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGT                                                                                                              >  2:486331/1‑145                                                                   ATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGT                                                                                                              <  1:486331/145‑1                                                                       GATTTGTCTTCTCTTGCAAATCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGG                                                                                                     <  1:1126685/150‑1                                                                       GATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGG                                                                                                     <  2:1006894/150‑1                                                                       GATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGG                                                                                                     <  1:1174805/150‑1                                                                        ATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGT                                                                                                    <  1:970675/150‑1                                                                                        AAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGT                                                                                                    <  2:1142112/134‑1                                                                                        AAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGT                                                                                                    >  1:1142112/1‑134                                                                                                                      GGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACA                                                                             <  2:874112/127‑1                                                                                                                      GGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACA                                                                             >  1:874112/1‑127                                                                                                                                                   GCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTT                         >  2:149741/1‑150                                                                                                                                                   GCCTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTT                         <  2:1073936/150‑1                                                                                                                                                     CTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGC                                                                                    <  1:706462/89‑1                                                                                                                                                     CTCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGC                                                                                    >  2:706462/1‑89                                                                                                                                                      TCTTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCA                      >  1:116253/1‑150                                                                                                                                                        TTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGA                                                                    >  1:245414/1‑102                                                                                                                                                        TTCGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGA                                                                    <  2:245414/102‑1                                                                                                                                                          CGCGGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAG                  >  2:1433/1‑150                                                                                                                                                             GGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAA                >  2:427735/1‑149                                                                                                                                                             GGGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAA                <  1:427735/149‑1                                                                                                                                                              GGTAAACCCGCTCCTACAGGTACATCCCCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAAGA              <  1:1433/150‑1                                                                                                                                                              GGTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAAGA              <  2:997375/150‑1                                                                                                                                                               GTAAACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAAGAC             >  1:1015823/1‑150                                                                                                                                                                   ACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAAGACAAAT         >  1:1182490/1‑150                                                                                                                                                                   ACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGG                                                             >  2:1033917/1‑98                                                                                                                                                                   ACCCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGG                                                             <  1:1033917/98‑1                                                                                                                                                                     CCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAAGACAAATCC       >  2:1156298/1‑150                                                                                                                                                                     CCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGC                       <  1:491613/134‑1                                                                                                                                                                     CCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGC                       >  2:491613/1‑134                                                                                                                                                                     CCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAAC                                                                       <  2:1186768/86‑1                                                                                                                                                                     CCGCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAAC                                                                       >  1:1186768/1‑86                                                                                                                                                                       GCTCCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGTGAGCGGGTTTACCCACGAAAAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAAGACAAATCCCA     >  2:64512/1‑150                                                                                                                                                                          CCTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAAGACAAATCCCATGA  <  1:149741/150‑1                                                                                                                                                                           CTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAAGA              >  2:1032884/1‑137                                                                                                                                                                           CTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAAGA              <  1:1032884/137‑1                                                                                                                                                                                                                                                                                                                                 ACGTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGAGGATACGGGTTTCGGCGGTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4861027‑4861197 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctcttcgcgggtaaacccgctccTACAGGTACATCACCGCCCTAGGGCATGTGACGCCCTTGTGGGAGCGGGTTTACCCGCGAAGAGGCTGGCACAGTCAACAGACACCTGGAACCCCACGCACCACCCCAAGCTGCTCTTTTGCTTTGCAAGAGAAGACAAATCCCATGA  <  NC_002947/4861238‑4861091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.