New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4876412	56 (1.240)	3 (0.080) +TGCGGTGGTGGCGGCAAC	3/210	NT	5.2%	intergenic (+205/+232)	PP_4284/pucM	transporter/5‑hydroxyisourate hydrolase
	?	NC_002947	= 5389439	73 (1.630)					intergenic (+90/‑230)	dld2/PP_4738	D‑lactate dehydrogenase/hypothetical protein

GCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4876327‑4876412 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGCTCCCCACCTATATCAACGCGTTAGAGGCTGCGTGGCCGGGTGACGCGGTCTACCAGGTAGACCAGGCCGTGGTAGTCGA  <  NC_002947/5389439‑5389291                                                                                       ||||||||||||||||||                                                                                                                                                      GCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCG                                                                                                         >  1:81697/1‑150              CGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTC                                                                                            <  2:81697/150‑1                 GTAAACCCGCTCCTACCACGG‑GGTGGACAGTAGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC                                                                                        >  1:1136057/1‑150                                                                                                        CGGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGCTCCCCACCTATATCAACGCGTTAGAGGCTGCGTGGCCGGGTGACGCGGTCTACCAGGTAGACCAGGCCGTGGTAGTCGA  <  2:173335/150‑1                                                                                       ||||||||||||||||||                                                                                                                                                      GCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4876327‑4876412 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGGACAGTGGGTGGGGATTGGCCAGCAGGACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGCGCTCCCCACCTATATCAACGCGTTAGAGGCTGCGTGGCCGGGTGACGCGGTCTACCAGGTAGACCAGGCCGTGGTAGTCGA  <  NC_002947/5389439‑5389291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.