New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4876412	56 (1.240)	3 (0.080) +TGCGGTGGTGGCGGCAAC	3/210	NT	5.2%	intergenic (+205/+232)	PP_4284/pucM	transporter/5‑hydroxyisourate hydrolase
	?	NC_002947	= 5389439	73 (1.630)					intergenic (+90/‑230)	dld2/PP_4738	D‑lactate dehydrogenase/hypothetical protein

CACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGC  >  NC_002947/4876268‑4876555                                                                                                                                                 |                                                                                                                                                cACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAggc                                                                                                                                            <  1:694909/150‑1 (MQ=255)    ccGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAggccgg                                                                                                                                         >  1:65720/1‑150 (MQ=255)    ccGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGACCGGGCTCAACCCACAAGAggccgg                                                                                                                                         >  2:611419/1‑150 (MQ=18)            gggCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAACCCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGAGAAGAGGCCGGCCctgctg                                                                                                                                 <  1:1002569/150‑1 (MQ=255)                      tgctgGCCAATCCCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCt                                                                                                                       >  1:100174/1‑150 (MQ=255)                         tgGCCAATCCCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTAcc                                                                                                                    >  1:692807/1‑150 (MQ=255)                                       gcgccgcTCCCCGTTGGTGACGCTCGCGTATTCGCGGGTAAGCGCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGtt                                                                                                      <  2:665176/149‑1 (MQ=18)                                         gccgTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTgc                                                                                                    >  1:986674/1‑150 (MQ=255)                                               cACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGccac                                                                                              >  1:501735/1‑150 (MQ=255)                                                aCCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATACCTACCCGCCGTTCACCGTTGCCGccacc                                                                                             >  1:306741/1‑150 (MQ=255)                                                   gTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCaccacc                                                                                          <  2:664985/150‑1 (MQ=255)                                                           cgccACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTcgc                                                                                  >  2:1191888/1‑150 (MQ=255)                                                            gccACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTTACCCGCGAAtgcggtggtggcggcaacggtgaacggcgggtagggattggccagcagggccggcctcttcgcg                                                                                 >  1:81697‑M1/1‑86 (MQ=255)                                                             ccACCGTATTGGCGGGTAAAGCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCgg                                                                                <  2:158340/150‑1 (MQ=255)                                                             ccACCGTACGCGCGGGTACCCCCCCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAAGCGCCGGCCCTGCTGGCAAATCCCGACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCgg                                                                                <  2:41748/150‑1 (MQ=17)                                                                 cGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTaa                                                                            >  2:817751/1‑150 (MQ=255)                                                                   tATTCGCGGGTAAACCCGCTGCTACAACGGTGGTGGACCGTTGATTTCAGCCCTCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAAc                                                                          <  1:1174201/150‑1 (MQ=21)                                                                   tATCCGTGGGTGAGCCCGCTCCTACAACGGGGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAAc                                                                          <  2:153906/150‑1 (MQ=18)                                                                        gcgGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTGAACCCGCt                                                                     >  2:1136057/1‑150 (MQ=255)                                                                         cgGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTTACCCGCGAAtgcggtggtggcggcaacggtgaacggcgggtagggattggccagcagggccggcctcttcgcgggtgaacccgctc                                                                    <  2:81697‑M1/150‑78 (MQ=255)                                                                          gggTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCCGGTAAACCCGCGcc                                                                   >  2:415279/1‑150 (MQ=255)                                                                            gTAAACCCGCTCCTACCACGG‑GGTGGACAGTAGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAtgcggtggtggcggcaacggtgaacggcgggtagggattggccagcagggccggcctcttcgcgggtgaacccgctcctac                                                                >  1:1136057‑M1/1‑69 (MQ=255)                                                                                   cGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACggg                                                          <  1:817751/150‑1 (MQ=255)                                                                                     cTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACgggtt                                                        <  2:901049/150‑3 (MQ=255)                                                                                      tCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTg                                                       <  2:146058/150‑1 (MQ=255)                                                                                      gccTCCAACAGTGGTGGACAGTTGGATACAGCACGCCGCAGGAGCCGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTg                                                       <  2:65720/149‑1 (MQ=18)                                                                                        cTACACGGGTGGTTGCCAGTTGGATACAGCCCGCCGTAGTAGCGGCTTCCCCCGCGAAGAGGCCGTCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGa                                                     <  2:100174/150‑1 (MQ=17)                                                                                          aCAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAAc                                                                          <  2:98424/127‑1 (MQ=255)                                                                                          aCAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAAc                                                                          >  1:98424/1‑127 (MQ=255)                                                                                           cAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTgg                                                                                                                                <  2:290320/72‑1 (MQ=255)                                                                                           cAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTgg                                                                                                                                >  1:290320/1‑72 (MQ=255)                                                                                            aaCGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCgg                                                                                >  2:950721/1‑119 (MQ=255)                                                                                            aaCGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCgg                                                                                <  1:950721/119‑1 (MQ=255)                                                                                              cGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTg                                               <  1:1191888/150‑1 (MQ=255)                                                                                                gtggtgGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGa                                             <  2:383707/150‑1 (MQ=255)                                                                                                    tggACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGt                                                        <  2:502968/135‑1 (MQ=255)                                                                                                    tggACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGt                                                        >  1:502968/1‑135 (MQ=255)                                                                                                      gtcAGGTGGAGACAGCTCCCCTTCCGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGc                                       <  1:1181830/148‑1 (MQ=18)                                                                                                      gACAGTTGGATACAGCAGGGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGc                                       >  2:1012647/1‑150 (MQ=255)                                                                                                               aTACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACccgc                                                                                                                 <  1:942460/67‑1 (MQ=255)                                                                                                               aTACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACccgc                                                                                                                 >  2:942460/1‑67 (MQ=255)                                                                                                                   aGCCCGCCGTAGGCGCGGGCTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCCGGTAAACCCCATCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGc                          >  2:357492/1‑150 (MQ=18)                                                                                                                     cccGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCgg                        >  2:1089885/1‑150 (MQ=255)                                                                                                                              ggAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCcg               <  2:986674/150‑1 (MQ=255)                                                                                                                               gAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCAc                                                             >  2:330473/1‑103 (MQ=255)                                                                                                                               gAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCAc                                                             <  1:330473/103‑1 (MQ=255)                                                                                                                                   gggTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAag          >  2:312355/1‑150 (MQ=255)                                                                                                                                    ggTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCgg                                                                                <  1:693024/79‑1 (MQ=255)                                                                                                                                    ggTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCgg                                                                                >  2:693024/1‑79 (MQ=255)                                                                                                                                    ggTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAaga         >  1:885203/1‑150 (MQ=255)                                                                                                                                       ccACCCGCGAAGCGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGGCACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGc      <  1:1136975/149‑1 (MQ=255)                                                                                                                                           ccGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCgg                                                                                <  1:684347/72‑1 (MQ=255)                                                                                                                                           ccGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCgg                                                                                >  2:684347/1‑72 (MQ=255)                                                                                                                                           ccGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGt                                                        <  2:453935/96‑1 (MQ=255)                                                                                                                                           ccGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGt                                                        >  1:453935/1‑96 (MQ=255)                                                                                                                                           ccGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGtt                                                >  1:930366/1‑104 (MQ=255)                                                                                                                                           ccGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGtt                                                <  2:930366/104‑1 (MQ=255)                                                                                                                                           ccGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGc  >  1:432513/1‑150 (MQ=255)                                                                                                                                            cgcgAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGt                                                 >  2:1111613/1‑102 (MQ=255)                                                                                                                                            cgcgAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGt                                                 <  1:1111613/102‑1 (MQ=255)                                                                                                                                               gAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAgg                             >  1:36260/1‑119 (MQ=255)                                                                                                                                               gAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAgg                             <  2:36260/119‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                CACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGGTGGACAGTTGGACACAGCCCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGC  >  NC_002947/4876268‑4876555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.