New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4959601	37 (0.820)	4 (0.090)	4/240	NT	10.4%	coding (915/1779 nt)	fliF	flagellar M‑ring protein
	?	NC_002947	= 4959615	33 (0.760)					coding (901/1779 nt)	fliF	flagellar M‑ring protein

ACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4959542‑4959601 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCCCGACCAGCCGGCGTTGCGCA  <  NC_002947/4959615‑4959594                                                                                    ACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACCCCGACCAGCCGGCGTTGCGC   >  1:49146/1‑81 ACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACCCCGACCAGCCGGCGTTGCGC   <  2:49146/81‑1          GGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACCCCGACCAGCCGGCGTTGCGCA  <  1:1010406/73‑1          GGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACCCCGACCAGCCGGCGTTGCGCA  >  2:1010406/1‑73                                                                                    ACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4959542‑4959601 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCCCGACCAGCCGGCGTTGCGCA  <  NC_002947/4959615‑4959594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.