New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4959601	37 (0.820)	4 (0.090)	4/240	NT	10.4%	coding (915/1779 nt)	fliF	flagellar M‑ring protein
	?	NC_002947	= 4959615	33 (0.760)					coding (901/1779 nt)	fliF	flagellar M‑ring protein

AGCCGGGGTAGCCGCGCCACCAGTGGTCTGCGGTGCCGAAGCGGCGCCTGGCGGCTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGAGCATGCTTTCCACCCGGCGGCTGTAGTCGAAC  >  NC_002947/4959466‑4959763                                                                                                                                                      |                                                                                                                                                      agcCGGGGTAGCCGCGCCACCAGTGGTCTGCGGTGCCGAAGCGGCGCCTGGCGGCTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCggg                                                                                                                                                       <  1:53134/150‑1 (MQ=255)        gTAGCCGCGCCACCAGTGGTCTGCGGTGCCGAAGCGGCGCCTGGCGGCTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAAc                                                                                                                                                >  1:608869/1‑150 (MQ=255)              gcgcCACCAGTGGTCTGCGGTGCCGAAGCGGCGCCTGGCGGCTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCg                                                                                                                                          <  1:926717/150‑1 (MQ=255)              gcgcCACCAGTGGTCTGCGGTGCCGAAGCGGCGCCTGGCGGCTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCg                                                                                                                                          >  1:1098408/1‑150 (MQ=255)                   accaGTGGTCTGCGGTGCCGAAGCGGCGCCTGGCGGCTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGGCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGt                                                                                                                                     <  2:487219/150‑1 (MQ=255)                                          cggcgCCTGGCGGCTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGa                                                                                                             <  1:531797/150‑1 (MQ=255)                                          cggcgCCTGGCGGCTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGa                                                                                                             >  1:648719/1‑150 (MQ=255)                                            gcgcCTGGCGGCTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAgg                                                                                                           <  2:403802/150‑1 (MQ=255)                                              gcCTGGCGGCTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTc                                                                                                         >  2:632900/1‑150 (MQ=255)                                                  ggcggcTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGaa                                                                                                                                                 >  2:1144551/1‑107 (MQ=255)                                                  ggcggcTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGaa                                                                                                                                                 <  1:1144551/107‑1 (MQ=255)                                                        tGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGGTCCCAGCGCTGCTCCGGCTGGTAGGGGTTGTAGT‑CTCGGAAGTGGGATTCGACCTCGCTAAAGTCGAGGTCGGCAGACACt                                                                                               >  1:570023/1‑150 (MQ=255)                                                           ttGCTGAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCg                                                                                            <  1:495688/150‑1 (MQ=255)                                                               ttaGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCt                                                                                        >  2:600845/3‑150 (MQ=255)                                                                       ccAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCgg                                                                                >  1:1075521/1‑150 (MQ=255)                                                                            cgcacCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGtt                                                                           <  2:658529/148‑1 (MQ=255)                                                                             acacCTTGCGGGCCTTGGCTGATGGCATGCTGGTCATCTACCGACTGGTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGACCTTGTAGCGGTCGTTg                                                                          <  2:615300/150‑1 (MQ=255)                                                                               acCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCg                                                                                            <  1:360218/130‑1 (MQ=255)                                                                               acCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCg                                                                                            >  2:360218/1‑130 (MQ=255)                                                                                ccTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGccc                                                                       <  2:648719/150‑1 (MQ=255)                                                                                 cTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCa                                                                      >  2:673410/1‑150 (MQ=255)                                                                                         ccTTGGCTGCTGGTTCGTTGTAAGTCGACGGACTGCTCGCTGCGCTACGCCGGCTGGTCGGGGTTGACCCGTTCCGAGGT‑GCACTCGACCGCGCTTACGTCGCGCTCCGCGGACACTTCTGCATTGTAGCAGTCGTTGTACCCCACCGGc                                                              <  2:570023/150‑1 (MQ=255)                                                                                           ttGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTg                                                            >  1:461211/1‑150 (MQ=255)                                                                                               ctgctgGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGa                                                        >  2:263091/1‑150 (MQ=255)                                                                                                  ctgGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTTTAGCGGTCGTTGCCCAACACCGGCTGCAGAAtg                                                     >  2:180135/1‑150 (MQ=255)                                                                                                      cACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAAtgttgt                                                 >  1:576797/1‑150 (MQ=255)                                                                                                       aCGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCCAACGCTTTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTtgtg                                                <  2:347017/150‑1 (MQ=255)                                                                                                                   gaccgacTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCgg                                                                                >  1:413095/1‑106 (MQ=255)                                                                                                                   gaccgacTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCgg                                                                                <  2:413095/106‑1 (MQ=255)                                                                                                                     ccgacTGCTCGCTGCTCTTTGCCGGTTGGTCGGGGTTGTACTGTTCGGAGGT‑GGTCGCGACCGCGCTGAAGTCGAGGTCGGCGGACATTTCGGGCTTGTAGCTGTCGTTGACGAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGa                                  <  2:579569/150‑1 (MQ=255)                                                                                                                          tGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGAGCATg                             >  2:359380/1‑150 (MQ=255)                                                                                                                             tCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCtt                                                                                       <  1:527483/89‑1 (MQ=255)                                                                                                                             tCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCtt                                                                                       >  2:527483/1‑89 (MQ=255)                                                                                                                               gCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGAGCATGCTTTc                        <  1:359380/150‑1 (MQ=255)                                                                                                                                 tGCGCAACGCCGGCTGGTCGGGgttgcgcagcgagcagtcggtcgacgaacaacgtgccagcagccaaggccc                                                                                                    >  2:1010406‑M2/1‑22 (MQ=255)                                                                                                                                 tGCGCAACGCCGGCTGGTCGGGgttgcgcagcgagcagtcggtcgacgaacaacgtgccagcagccaaggccc                                                                                                    <  1:1010406‑M2/73‑52 (MQ=255)                                                                                                                                  gcgcAACGCCGGCTGGTCGGGgttgcgcagcgagcagtcggtcgacgaacaacgtgccagcagccaaggcccgcaaggtgt                                                                                           <  2:49146‑M2/81‑61 (MQ=255)                                                                                                                                  gcgcAACGCCGGCTGGTCGGGgttgcgcagcgagcagtcggtcgacgaacaacgtgccagcagccaaggcccgcaaggtgt                                                                                           >  1:49146‑M2/1‑21 (MQ=255)                                                                                                                                            ggCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGAGCATGCTTTCCACCCGGCGGCTg           >  1:686995/1‑150 (MQ=255)                                                                                                                                            ggCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGAGCATGCTTTCCACCCGGCGGCTg           <  2:686995/150‑1 (MQ=255)                                                                                                                                                 gTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGAGCATGCTTTCCACCCGGCGGCTGTAGTc      >  1:695702/1‑150 (MQ=255)                                                                                                                                                  tCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGAGCATGCTTTCCACCCGGCGGCTGTAGTCg     >  2:236533/1‑150 (MQ=255)                                                                                                                                                  tCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGAGCATGCTTTCCACCCGGCGGCTGTAGTCg     >  2:1006907/1‑150 (MQ=255)                                                                                                                                                  tCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGAGCATGCTTTCCACCCGGCGGCTGTAGTCg     >  1:571575/1‑150 (MQ=255)                                                                                                                                                    ggggTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGAGCATGCTTTCCACCCGGCGGCTGTAGTCGaa   <  2:461211/150‑1 (MQ=255)                                                                                                                                                     gggTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTTTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGGACACGCTGGGTGAGCATGCTTTCCACCCGGCGGCTGTAGTCGAAc  <  1:180135/150‑1 (MQ=255)                                                                                                                                                     gggTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGAGCATGCTTTCCACCCGGCGGCTGTAGTCGAAc  <  2:695702/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      AGCCGGGGTAGCCGCGCCACCAGTGGTCTGCGGTGCCGAAGCGGCGCCTGGCGGCTGGTTGCTCAGCGCGCCAGGCACACCTTGCGGGCCTTGGCTGCTGGCACGTTGTTCGTCGACCGACTGCTCGCTGCGCAACGCCGGCTGGTCGGGGTTGAACTGTTCGGAGGT‑GGACTCGACCGCGCTGAAGTCGAGGTCGGCGGACACTTCGGCCTTGTAGCGGTCGTTGCCCAACACCGGCTGCAGAATGTTGTGCACACGCTGGGTGAGCATGCTTTCCACCCGGCGGCTGTAGTCGAAC  >  NC_002947/4959466‑4959763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.