New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4977437 =	43 (0.950)	4 (0.090)	4/238	NT	8.6%	coding (500/1110 nt)	flgI	flagellar P‑ring protein
	?	NC_002947	4977484 =	44 (1.020)					coding (453/1110 nt)	flgI	flagellar P‑ring protein

TCGAAGAGCCTGCGCGGCGGCAGCCTGTTGATGACCCCGCTCAAGGGTATCGACGGCAACGTTTACGCCATTGCCCAGGGCAACCTGGTCGTGGGTGGCTTTGACGCCGAGGGCCGTGACGGCTCGAAGATCACTGTCAACGTGCCGTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4977588‑4977437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGTCATCAACAGGCTGCCGCCGCGCAGGCTCTTCGAGTTACCGATC  >  NC_002947/4977484‑4977598                                                                                                                                                                                                                                                                             TCGAAGAGCCTGCGCGGCGGCAGCCTGTTGATGACCCCGCTCAAGGGTATCGACGGCAACGTTTACGCCATTGCCCAGGGCAACCTGGTCGTGGGTGGCTTTGACGCCGAGGGCCGTGACGGCTCGAAGATCACTGTCAACGTGCCGTCG                                                                                                                       >  1:492884/1‑150                                                                                                   CTTTGACGCCGAGGGCCGTGACGGCTCGAAGATCACTGTCAACGTGCCGTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGTCATCAACAGGCTGCCGCCGCGCAG                     >  2:33394/1‑150                                                                                                    TTTGACGCCGAGGGCCGTGACGGCTCGAAGATCACTGTCAACGTGCCGTCGGCGTCAAAGCCACCCACGACCAGGT                                                                                              >  1:906935/1‑76                                                                                                    TTTGACGCCGAGGGCCGTGACGGCTCGAAGATCACTGTCAACGTGCCGTCGGCGTCAAAGCCACCCACGACCAGGT                                                                                              <  2:906935/76‑1                                                                                                                      GACGGCTCGAAGATCACTGTCAACGTGCCGTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGTCATCAACAGGCTGCCGCCGCGCAGGCTCTTCGAGTTACCGATC  <  1:33394/150‑1                                                                                                                                                                                                                                                                             TCGAAGAGCCTGCGCGGCGGCAGCCTGTTGATGACCCCGCTCAAGGGTATCGACGGCAACGTTTACGCCATTGCCCAGGGCAACCTGGTCGTGGGTGGCTTTGACGCCGAGGGCCGTGACGGCTCGAAGATCACTGTCAACGTGCCGTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4977588‑4977437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGTCATCAACAGGCTGCCGCCGCGCAGGCTCTTCGAGTTACCGATC  >  NC_002947/4977484‑4977598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.