New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4977437 =	43 (0.950)	4 (0.090)	4/238	NT	8.6%	coding (500/1110 nt)	flgI	flagellar P‑ring protein
	?	NC_002947	4977484 =	44 (1.020)					coding (453/1110 nt)	flgI	flagellar P‑ring protein

GTCGTTGACCTTGTCCACGATGCGCTTGGCGGTCGTGAAGTCGGGGCGATTGAGGTTCAGGGTCAGGGTATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGTCATCAACAGGCTGCCGCCGCGCAGGCTCTT  >  NC_002947/4977304‑4977585                                                                                                                                      |                                                                                                                                                     gTCGTTGACCTTGTCCACGATGCGCTTGGCGGTCGTGAAGTCGGGGCGATTGAGGTTCAGGGTCAGGGTATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGAc                                                                                                                                      >  1:619158/1‑150 (MQ=255)    gTTGACCTTGTCCACGATGCGCTTGGCGGTCGTGAAGTCGGGGCGATTGAGGTTCAGGGTCAGGGTATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGt                                                                                                                                   <  1:609253/150‑1 (MQ=255)    gTTGACCTTGTCCACGATGCGCTTGGCGGTCGTGAAGTAGGGGCGATTGAGGTTCAGGGTCAGGGTATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGt                                                                                                                                   >  2:590051/1‑150 (MQ=255)         ccTTGTCCACGATGCGCTTGGCGGTCGTGAAGTCGGGGCGATTGAGGTTCAGGGTCAGGGTATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCt                                                                                                                              >  2:1179147/1‑150 (MQ=255)             gTCCACGATGCGCTTGGCGGTCGTGAAGTCGGGGCGATTGAGGTTCAGGGTCAGGGTATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGa                                                                                                                          <  1:590051/150‑1 (MQ=255)                   gatcggtaactcgaagagcctgcgcggcggcagcctgttgatgaccccgctcaagggtatcgacggcaacgtttacgccattgcccagggcaacctggtcgtgggtggctttgacGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTc                                                                                                                    <  1:33394‑M1/35‑1 (MQ=255)                        gcTTGGCGGTCGTGAAGTCGGGGCGATTGAGGTTCAGGGTCAGGGTATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGc                                                                                                               >  2:602565/1‑150 (MQ=255)                                     gAAGTCGGGGCGATTGAGGTTCAGGGTCAGGGTATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCTGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCaaa                                                                                                  <  1:819334/150‑1 (MQ=255)                                      ctgcgcggcggcagcctgttgatgaccccgctcaagggtatcgacggcaacgtttacgccattgcccagggcaacctggtcgtgggtggctttgacGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAg                                                                                                 >  2:33394‑M1/97‑150 (MQ=255)                                                gATTGAGGTTCAGGGTCAGGGTATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGa                                                                                       >  2:324926/1‑150 (MQ=255)                                                       gTTCAGGGTCAGGGTATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGtt                                                                                <  1:500453/150‑1 (MQ=255)                                                          cagggtccgggtATTCCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCCCCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGcc                                                                             <  1:758345/150‑1 (MQ=255)                                                           agggtcagggtATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGccc                                                                            <  2:929479/150‑1 (MQ=255)                                                               tcagggtATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTggg                                                                        <  1:602565/150‑1 (MQ=255)                                                                 agggtATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTgg                                                                         >  2:946212/1‑147 (MQ=255)                                                                 agggtATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTgg                                                                         <  1:946212/147‑1 (MQ=255)                                                                    gtATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATg                                                                   <  1:324926/150‑1 (MQ=255)                                                                     tATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACAGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATgg                                                                  >  1:315374/1‑150 (MQ=255)                                                                          cccTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTaa                                                             >  2:759067/1‑150 (MQ=255)                                                                          cccTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTaa                                                             >  1:1191721/1‑150 (MQ=255)                                                                            cTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTc                                                                                                                            <  1:253040/85‑1 (MQ=255)                                                                            cTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTc                                                                                                                            >  2:253040/1‑85 (MQ=255)                                                                              ggTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGt                                                         >  1:1163620/1‑150 (MQ=255)                                                                                     gCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGa                                                                                                                                       <  2:487337/65‑1 (MQ=255)                                                                                     gCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGa                                                                                                                                       >  1:487337/1‑65 (MQ=255)                                                                                      ccGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCg                                                 >  1:997276/1‑150 (MQ=255)                                                                                            ggTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATAccc                                           >  2:514082/1‑150 (MQ=255)                                                                                              tACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAg                                                                                   >  2:1053960/1‑108 (MQ=255)                                                                                              tACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAg                                                                                   <  1:1053960/108‑1 (MQ=255)                                                                                              tACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCtt                                         <  2:997276/150‑1 (MQ=255)                                                                                                  gCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTg                                                       >  1:650645/1‑132 (MQ=255)                                                                                                  gCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTg                                                       <  2:650645/132‑1 (MQ=255)                                                                                                    aCGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCg                                                 >  2:238545/1‑136 (MQ=255)                                                                                                    aCGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCg                                                 <  1:238545/136‑1 (MQ=255)                                                                                                     cGCTCGACACTGGCACCACCCGCGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCGCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCggg                                  <  1:756320/150‑1 (MQ=255)                                                                                                      gCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCgggg                                 >  1:405049/1‑150 (MQ=255)                                                                                                       cccGACACTGGCACCCCCCGCGACACCGCCAGCCGCCGGCACTTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGCGCTCAAAGCCACCCACTCCCAAGTTGCCCTGGGCAATGGCGTAAACGTCTCCGTCGATACCCTTGAGCGGGGt                                <  2:315374/148‑1 (MQ=255)                                                                                                       cTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGt                                >  2:3716/1‑150 (MQ=255)                                                                                                           acacTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGtcatc                            <  1:3716/150‑1 (MQ=255)                                                                                                           acacTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTCGCCGTCGa                                                <  1:709428/130‑1 (MQ=255)                                                                                                           acacTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTAGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGa                                                >  2:709428/1‑130 (MQ=255)                                                                                                               acctggtcgtgggtggctttgacGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCaaa                                                                                                  >  1:906935‑M1/24‑76 (MQ=255)                                                                                                               acctggtcgtgggtggctttgacGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCaaa                                                                                                  <  2:906935‑M1/53‑1 (MQ=255)                                                                                                                        ccGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTTGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGc                                                                 <  2:781475/100‑1 (MQ=255)                                                                                                                        ccGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTTGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGc                                                                 >  1:781475/1‑100 (MQ=255)                                                                                                                        ccGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGTCATCAACAGGCTgccgc               >  2:492884/1‑150 (MQ=255)                                                                                                                        ccGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGTCATCAACAGGCTgccgc               >  1:284901/1‑150 (MQ=255)                                                                                                                                 ggCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGTCATCAACAGGCTGCCGCCGCGCAGGc      >  1:1142385/1‑150 (MQ=255)                                                                                                                                  gCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGTCATCAACAGGCTGCCGCCGCGCAGGct     >  2:693402/1‑150 (MQ=255)                                                                                                                                    cAGCCGACGGCACGTTGACAGTGATCTTCGAGCCATCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGTCATCAACAGGCTGCCGCCGCGCAGGctct   >  1:1001439/1‑150 (MQ=255)                                                                                                                                     aGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGTCATCAACAGGCTGCCGCCGCGCAGGCTCtt  >  1:546303/1‑150 (MQ=255)                                                                                                                                      |                                                                                                                                                     GTCGTTGACCTTGTCCACGATGCGCTTGGCGGTCGTGAAGTCGGGGCGATTGAGGTTCAGGGTCAGGGTATTGCCCTGGTTGAAGCCGCTCGGTACCGCACGCTCGACACTGGCACCACCCGGGATACGGCCAGCCGACGGCACGTTGACAGTGATCTTCGAGCCGTCACGGCCCTCGGCGTCAAAGCCACCCACGACCAGGTTGCCCTGGGCAATGGCGTAAACGTTGCCGTCGATACCCTTGAGCGGGGTCATCAACAGGCTGCCGCCGCGCAGGCTCTT  >  NC_002947/4977304‑4977585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.