New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5382480	15 (0.330)	6 (0.190)	5/178	NT	30.2%	intergenic (+52/+81)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
	?	NC_002947	= 5382508	17 (0.520)					intergenic (+80/+53)	smpB/pdhR	SsrA‑binding protein/DNA‑binding transcriptional regulator LldR

AGCACCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5382298‑5382480 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcgcgggcaagcccgctcccacaggaTAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATCGCGTTCGCGCATG  <  NC_002947/5382508‑5382362                                                                                                                                                                                                                                                                                                                                            AGCACCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCC                                                                                                                                                                                      >  2:248332/1‑150      cttgcccAGTGCGATTTCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCT                                                                                                                                                                                 >  1:539876/8‑150            AAGTGCGAAATCGCACTGGGCAAGGGCAAGAATGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGC                                                                                                                                                                           >  2:1117841/1‑150                  GAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACAGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAA                                                                                                                                                                     >  1:857746/1‑150                       CGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCG                                                                                                                                                                <  1:100330/150‑1                        GCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGC                                                                                                                                                               >  1:1105360/1‑150                          ACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTC                                                                                                                                                             >  2:1188270/1‑150                               GCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACA                                                                                                                                                        >  1:100761/1‑150                                                          GCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTG                                                                                                                             <  1:1117841/150‑1                                                                     CGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTG                                                                                                                  <  2:771739/150‑1                                                                     CGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCGTGAATCTGGTGCCATTCCTGTG                                                                                                                  <  2:281855/150‑1                                                                      GCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCTGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGG                                                                                                                 <  2:60691/150‑1                                                                        GAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAG                                                                                                                                                       >  1:1028544/1‑110                                                                        GAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAG                                                                                                                                                       <  2:1028544/110‑1                                                                                    AACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACA                                                                                                                                                        <  2:851226/97‑1                                                                                    AACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACA                                                                                                                                                        >  1:851226/1‑97                                                                                                                              gtGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGT                                                                                                                              <  1:569164/79‑1                                                                                                                              GAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGT                                                                                                                              >  2:569164/1‑81                                                                                                                                                   TTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGG                                                                                                                 <  2:604526/73‑1                                                                                                                                                   TTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGG                                                                                                                 >  1:604526/1‑73                                                                                                                                                              gaGCGGGCTTGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTCTGGGAGCGGGCTTGCCCGCGAAAAGGCCGGGACGGGTTGGAGAGGAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGC                         >  2:1122749/3‑150                                                                                                                                                                   GGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTG                    >  1:114004/1‑150                                                                                                                                                                      AAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTGCGCACAGCCCGCTGCAGCTCGCGGTTGGAA                 >  1:253138/1‑150                                                                                                                                                                      AAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAA                 >  2:100761/1‑150                                                                                                                                                                      AAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCCCACAGCCCGCTGCAGCCCGCGGTTGGAA                 >  1:1194011/1‑150                                                                                                                                                                       AGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAA                                                                           <  1:416684/91‑1                                                                                                                                                                       AGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAA                                                                           >  2:416684/1‑91                                                                                                                                                                        GCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATC               >  2:176877/1‑150                                                                                                                                                                        GCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTAC                                                                 <  2:702962/100‑1                                                                                                                                                                        GCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTAC                                                                 >  1:702962/1‑100                                                                                                                                                                          CCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGT                      <  1:17580/141‑1                                                                                                                                                                          CCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGT                      >  2:17580/1‑141                                                                                                                                                                           CGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATCGCG            >  2:3204/1‑150                                                                                                                                                                                CCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATCGCGTTCGC       >  1:83917/1‑150                                                                                                                                                                                 CACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATCGCGTTCGCG      >  1:162539/1‑150                                                                                                                                                                                     GGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATCGCGTTCGCGCATG  >  1:1188270/1‑150                                                                                                                                                                                     GGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATCGCGTTCGCGCATG  <  1:983066/150‑1                                                                                                                                                                                      GATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAG                              <  1:666366/121‑1                                                                                                                                                                                      GATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAG                              >  2:666366/1‑121                                                                                                                                                                                                                                                                                                                                            AGCACCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5382298‑5382480 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcgcgggcaagcccgctcccacaggaTAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATCGCGTTCGCGCATG  <  NC_002947/5382508‑5382362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.