| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5382480 | 15 (0.330) | 6 (0.190) | 5/178 | NT | 30.2% | intergenic (+52/+81) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | = 5382508 | 17 (0.520) | intergenic (+80/+53) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
CATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCT > NC_002947/5382362‑5382653 | cATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcc > 1:1188270‑M2/1‑147 (MQ=255)cATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcc < 1:983066‑M2/150‑4 (MQ=255) cgcgAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtg > 1:162539‑M2/1‑143 (MQ=255) gcgAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgg > 1:83917‑M2/1‑142 (MQ=255) cgcgATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcg > 2:3204‑M2/1‑137 (MQ=255) gATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggc > 2:176877‑M2/1‑134 (MQ=255) ttCCAACCGCGGGCTGCAGCGGGCTGTGGGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggctt > 1:1194011‑M2/1‑132 (MQ=255) ttCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggctt > 2:100761‑M2/1‑132 (MQ=255) ttCCAACCGCGAGCTGCAGCGGGCTGTGCGCAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggctt > 1:253138‑M2/1‑132 (MQ=255) cAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcc > 1:114004‑M2/1‑129 (MQ=255) aCCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgg < 1:17580‑M2/141‑15 (MQ=255) aCCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgg > 2:17580‑M2/1‑127 (MQ=255) gcgAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTCCTCTCCAACCCGTCCCGGCCTTTTCGCGGGCAAGCCCGCTCCCAGAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcaagcccgctc > 2:1122749‑M2/1‑124 (MQ=255) cTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtc > 2:666366‑M2/1‑119 (MQ=255) cTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtc < 1:666366‑M2/121‑3 (MQ=255) gTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggc < 2:702962‑M2/100‑17 (MQ=255) gTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggc > 1:702962‑M2/1‑84 (MQ=255) ttCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggct < 1:416684‑M2/91‑18 (MQ=255) ttCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggct > 2:416684‑M2/1‑74 (MQ=255) ccTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCAAAGGAATGGCACCAGCTTCAAGCCCGGCGCCTCTCCTGTGGGAGCGGCCTTCCCCGCGAAGAGGCCGGGTGCT‑CCCATCAAAGCCTCAGCGCCCGCTTCGCGGCTCTGGCcgcg > 1:67866/1‑150 (MQ=25) tctTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTggg > 2:497542/1‑150 (MQ=255) tctTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCATCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTggg > 1:304355/1‑150 (MQ=255) ctTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGc < 1:497542/150‑1 (MQ=255) aaGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTgc < 2:304355/150‑1 (MQ=255) gCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCa > 2:1206411/1‑150 (MQ=255) ccACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaa > 1:604526‑M2/1‑36 (MQ=255) ccACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaa < 2:604526‑M2/73‑38 (MQ=255) ccACAGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcaggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgttcgc < 2:60691‑M2/150‑115 (MQ=255) cacaGGAATGGCACCAGATTCACGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgttcgcg < 2:281855‑M2/150‑116 (MQ=255) cacaGGAATGGCACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgttcgcg < 2:771739‑M2/150‑116 (MQ=255) cacaGGAATGGCACCAGATTCAAGCCCGGCGCCTATCATGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCGTTTGATGCACATGGACCCGCTCCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATtcag > 1:274645/1‑150 (MQ=37) acaGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgcagc > 1:462052/1‑150 (MQ=255) acaGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGACCTCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgcagc > 1:316726/1‑150 (MQ=255) cACCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactcttccttgcccttgttccgcacagcccgctgcagctcgcggttggaatcgcgttcgcgcatggtgtcgc < 1:1117841‑M2/150‑127 (MQ=255) aCCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttactc > 2:569164‑M2/1‑23 (MQ=255) aCCAGATTCAAGCCCGGCGCCTAtcctgtgggagcgggcttgcccgcgaagaggccggaacaggttgaagagtagttacac < 1:569164‑M2/81‑59 (MQ=255) aCCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGcac > 1:767383/1‑150 (MQ=255) gATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGcc > 2:156851/1‑61 (MQ=255) gATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGcc < 1:156851/61‑1 (MQ=255) gATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATAc > 2:270312/1‑150 (MQ=255) ttCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCttcttc > 2:404393/1‑117 (MQ=255) ttCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCttcttc < 1:404393/117‑1 (MQ=255) aaGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAAt > 2:862314/1‑150 (MQ=255) gCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAAtgt > 1:371490/1‑150 (MQ=255) gcCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCt < 2:371490/150‑1 (MQ=255) aTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGt < 2:442845/103‑1 (MQ=255) aTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGt > 1:442845/1‑103 (MQ=255) | CATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCC‑GGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCT > NC_002947/5382362‑5382653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |