New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5487827 | 52 (1.150) | 4 (0.090) | 4/234 | NT | 8.5% | coding (1108/2772 nt) | PP_4824 | two‑component system sensor histidine kinase/response regulator |
? | NC_002947 | = 5487884 | 37 (0.870) | coding (1165/2772 nt) | PP_4824 | two‑component system sensor histidine kinase/response regulator |
GACGCCTGTTCAGCCTGGCCATGGTGGTGTTCAACCTCGGAGGCCTGGTACTGCTGCCAGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5487675‑5487827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcggCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGA < NC_002947/5487884‑5487828 GACGCCTGTTCAGCCTGGCCATGGTGGTGTTCAACCTCGGAGGCCTGGTACTGCTGCCAGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGG < 1:691682/150‑1 CGCCTGTTCAGCCTGGCCATGGTGGTGTTCAACCTCGGAGGCCTGGTACTGCTGCCAGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCt < 2:219465/150‑2 GCCTGTTCAGCCTGGCCATGGTGGTGTTCAACCTCGGAGGCCTGGTACTGCTGCCAGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGG > 1:404508/1‑150 GCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTG > 1:589125/1‑71 GCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTG < 2:589125/71‑1 CTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATG < 1:530206/100‑1 CTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATG > 2:530206/1‑100 TATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGA < 1:567348/107‑1 TATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGA > 2:567348/1‑107 GACGCCTGTTCAGCCTGGCCATGGTGGTGTTCAACCTCGGAGGCCTGGTACTGCTGCCAGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5487675‑5487827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcggCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGA < NC_002947/5487884‑5487828 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |