New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5487827	52 (1.150)	4 (0.090)	4/234	NT	8.5%	coding (1108/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 5487884	37 (0.870)					coding (1165/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator

ACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGTGAAGCAACGTGATTATGTGCAGA  >  NC_002947/5487755‑5488031                                                                                                                                  |                                                                                                                                                    aCCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATc                                                                                                                                 <  1:49830/150‑1 (MQ=255)    tcctcacCCCGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAAc                                                                                                                              <  2:85864/146‑1 (MQ=255)     cGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACg                                                                                                                             <  1:800081/150‑1 (MQ=255)            ctagctgctGAGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGAGGCGCATAAGCCAGGAGCGTTTCAGCGCCAGCCGTGCCCTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGc                                                                                                                      >  2:549924/4‑150 (MQ=255)                      tttATCCTGCTGGGCCTGCCCGTGGTAAGTGGCCTGCTCCTCAACCAGGCGGTCAGTGAAAGGCTGCGGCGCATACGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTg                                                                                                            <  2:1157097/148‑1 (MQ=255)                      tgtATCCTGCTGGGCCTGAACGGGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGGGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTg                                                                                                            <  2:578821/150‑1 (MQ=255)                        tATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGc                                                                                                          >  1:528362/1‑150 (MQ=255)                         aTCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGcc                                                                                                         <  2:244679/150‑1 (MQ=255)                                  ggCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGc                                                                                                >  2:122084/1‑150 (MQ=255)                                    ccTGACCGTGGTCAGTTGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCa                                                                                              >  2:50599/1‑150 (MQ=255)                                    ccTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCa                                                                                              >  1:335743/1‑150 (MQ=255)                                          cGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAAt                                                                                        >  2:382033/1‑150 (MQ=255)                                            tGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATcc                                                                                      <  1:1046083/150‑1 (MQ=255)                                                       cTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATg                                                                           >  2:330836/1‑150 (MQ=255)                                                           tcctcAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAACGCGGTTTTTCTCGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACg                                                                       <  1:813374/150‑1 (MQ=255)                                                             ctcAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTg                                                                                                            >  2:804110/1‑111 (MQ=255)                                                             ctcAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTg                                                                                                            <  1:804110/111‑1 (MQ=255)                                                               cAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGt                                                                   <  1:333542/150‑1 (MQ=255)                                                                   cTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTc                                                               >  1:631981/1‑150 (MQ=255)                                                                    tgtcGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCg                                                              >  2:322771/4‑150 (MQ=255)                                                                    tGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCaa                                                                                                       <  2:372710/109‑1 (MQ=255)                                                                    tGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCaa                                                                                                       >  1:372710/1‑109 (MQ=255)                                                                    tGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCg                                                              <  1:905637/150‑1 (MQ=255)                                                                          tCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGccgccaggttgaggagcaggccactgaccacggtcaggcccagcaggata                                                                                                   >  2:567348‑M2/1‑57 (MQ=255)                                                                          tCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGccgccaggttgaggagcaggccactgaccacggtcaggcccagcaggata                                                                                                   <  1:567348‑M2/107‑51 (MQ=255)                                                                           cAGTGAACGGCTGCGGCGCATAAGCGAGGAGCTTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGa                                                                                                     <  1:666440/104‑1 (MQ=255)                                                                           cAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGa                                                                                                     >  2:666440/1‑104 (MQ=255)                                                                               gAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGaa                                                   <  1:122820/150‑1 (MQ=255)                                                                                      tGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAActgctgc                                            >  2:243814/1‑150 (MQ=255)                                                                                       gcggcgCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAGCGGCGTGCTCGGCATGACTGAActgctgct                                           >  1:173440/1‑150 (MQ=255)                                                                                             cATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGccgccaggttgaggagcaggccactgaccacggtcaggcccagcaggatacacagcagccag                                                                                       >  2:530206‑M2/1‑38 (MQ=255)                                                                                             cATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGccgccaggttgaggagcaggccactgaccacggtcaggcccagcaggatacacagcagccag                                                                                       <  1:530206‑M2/100‑63 (MQ=255)                                                                                             cATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGcac                                     <  2:1077096/150‑1 (MQ=255)                                                                                                    gaggagCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGa                                                        >  2:969528/1‑124 (MQ=255)                                                                                                    gaggagCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGa                                                        <  1:969528/124‑1 (MQ=255)                                                                                                     aggagCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGt                             <  1:450911/150‑1 (MQ=255)                                                                                                         gCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGt                         <  1:243814/150‑1 (MQ=255)                                                                                                                   gcCAGCCGTGCACTGGCCGCCATCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGTGAAGCAACGt               >  1:342819/1‑150 (MQ=255)                                                                                                                     cAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGTGAAGCAACGTGa             >  1:1014717/1‑150 (MQ=255)                                                                                                                      aGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGTGAAGCAACGTGAt            >  1:660711/1‑150 (MQ=255)                                                                                                                         cGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGTGAAGCAACGTGATTAt         <  2:528362/150‑1 (MQ=255)                                                                                                                                tGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTggg                                        <  2:981794/112‑1 (MQ=255)                                                                                                                                tGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTggg                                        >  1:981794/1‑112 (MQ=255)                                                                                                                                tGGCCGCCAGCGATGCGGAAATCAAAGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGTGAAGCAACGTGATTATGTGCAGa  >  2:104902/1‑150 (MQ=255)                                                                                                                                  |                                                                                                                                                    ACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGAACGGCTGCGGCGCATAAGCGAGGAGCGTTTCAGCGCCAGCCGTGCACTGGCCGCCAGCGATGCGGAAATCAACGCCAAAGCCGAGTTTCTGGCCAAGATCAGCCACGAAATCCGCACCCCGATGAACGGCGTGCTCGGCATGACTGAACTGCTGCTGGGCACACCGCTGTCGGTGAAGCAACGTGATTATGTGCAGA  >  NC_002947/5487755‑5488031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.