New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5594170	28 (0.620)	4 (0.110)	4/192	NT	13.6%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5594207	29 (0.830)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

CATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5593994‑5594170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgtgggagcgggcttgcccgcgaa‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCC  <  NC_002947/5594207‑5594065                                                                                                                                                                                                                                                                                                                                   CATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCA                                                                                                                                                                             <  1:308439/150‑1     AGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTTATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCAGACACCACCCT                                                                                                                                                                         >  1:1034500/1‑150         CGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCANGGTCATNTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGG                                                                                                                                                                     <  1:608366/150‑1         CGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGAGTGGATGGTCGGGAGAGAACTGGCAGGTTGATGTGATGGTCAGGTCCGCAGGAGTGATGTTAAGTGACATACAGCACCCTGgtg                                                                                                                                                                     >  2:586691/1‑147         CGATGACGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGG                                                                                                                                                                     <  1:973321/150‑1              cgGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCG                                                                                                                                                                <  2:789729/148‑1               CGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGG                                                                                                                                                               >  2:1024441/1‑150               CGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGCGGGAGCGG                                                                                                                                                               >  2:146445/1‑150                     AAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCG                                                                                                                                                                <  1:466644/143‑1                     AAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATCGGATGGGCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCG                                                                                                                                                                >  2:466644/1‑143                       AACCACAGTGAAAACAGGTCGCGAGCACCGAAGATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCC                                                                                                                                                       <  2:221091/150‑1                       AACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCC                                                                                                                                                       >  2:282611/1‑150                          CACAGTGCAATTAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGG                                                                                                                                                                     <  1:604927/133‑1                          CACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGG                                                                                                                                                                     >  2:604927/1‑133                          CACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGAGGGGTTAAGTGGCATACACCACCATGTGGGAGCGGGCTTGCCCGCG                                                                                                                                                    >  1:131338/1‑150                            CAGCGAAAACAGGTCGCGAGCACCGAACATGCGCTGCTGGATGGGGATTGTATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTAATGTCCGCAGGAGTGATGTTACGTGGCATACACCACCATGTGGGAGCGGGCTTGCCCGCGAA                                                                                                                                                  <  1:586691/150‑1                                             GAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA                                                                                                                                                  <  2:1157969/133‑1                                             GAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA                                                                                                                                                  >  1:1157969/1‑133                                                                 TGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTACGTTTCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCACTGCGGTGCATGGCACCGGCTTTGCCGGT                                                                                                             <  1:146445/150‑1                                                                            gggcTGGTCGGGAGAGAACTGGGTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAA                                                                                                 <  1:136736/146‑1                                                                                         GAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGG                                                                                                                                                              >  1:129226/1‑77                                                                                         GAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGG                                                                                                                                                              <  2:129226/77‑1                                                                                            AACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGG                                                                                                    <  2:1156104/131‑1                                                                                            AACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGG                                                                                                    >  1:1156104/1‑131                                                                                                       TGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTG                                                                                                                                                                      <  1:1004839/55‑1                                                                                                       TGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTG                                                                                                                                                                      >  2:1004839/1‑55                                                                                                                                                      ACCCTGTGGGAGCGGGCTTGCCCGCGAA‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGT                       >  1:719258/1‑150                                                                                                                                                        CCTGTGGGAGCGGGCTTGCCCGCGAA‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTC                     >  2:813273/1‑150                                                                                                                                                              GGAGCGGGCTTGCCCGCGAA‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCC               >  2:593239/1‑150                                                                                                                                                              GGAGCGGGCTTGCCCGCGAA‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGC                           >  2:832349/1‑138                                                                                                                                                              GGAGCGGGCTTGCCCGCGAA‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGC                           <  1:832349/138‑1                                                                                                                                                                         GCCCGCGAA‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAAT    <  1:813273/150‑1                                                                                                                                                                         GCCCGCGAA‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAAT    <  1:593239/150‑1                                                                                                                                                                           CCGCGAA‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCC  >  1:300718/1‑150                                                                                                                                                                                                                                                                                                                                   CATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5593994‑5594170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgtgggagcgggcttgcccgcgaa‑GCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCC  <  NC_002947/5594207‑5594065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.