New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5773906 =	50 (1.110)	3 (0.070)	3/232	NT	6.8%	coding (413/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	5773970 =	36 (0.850)					coding (477/657 nt)	betI	choline‑responsive transcriptional repressor BetI

TTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5774060‑5773906 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcagcCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACAT  >  NC_002947/5773970‑5774056                                                                                                                                                                                                                                                    TTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGGGCGGCAGGGCGCGGCGGAACTG                                                                                              >  2:103766/1‑150  TCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGG                                                                                             <  1:232937/150‑1     ATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGCTCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAG                                                                                          >  2:460309/1‑150      TGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTCGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGC                                                                                         >  1:1163122/1‑150                                     GGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCA                                                                                           >  1:637331/1‑117                                     GGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCA                                                                                           <  2:637331/117‑1                                                                                 CGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGT                                                 >  1:656524/1‑115                                                                                 CGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGT                                                 <  2:656524/115‑1                                                                                             CTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGCCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACAT  >  1:708692/1‑150                                                                                                                                                                                                                                                    TTCCATGTATTCGTAAGCAATCCGTATCGCCTGGTCGGTGTCGAATGCATCACCCGACAGGGCGCCACGCAGCCACAAACCGTCGATCAGGGCTGCCAGGCCGCGGGCTGCCTTGCGCGCATGGTAGAGCGGCAGGGCGCGGCGGAACTGGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5774060‑5773906 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcagcCCTGATCGACGGTTTGTGGCTGCGTGGCGCCCTGTCGGGTGATGCATTCGACACCGACCAGGCGATACGGATTGCTTACGAATACAT  >  NC_002947/5773970‑5774056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.